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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000575 through 18771 annotations produced 1 hits



chr3L:749029-753505 (+) // 100.0 // (extramacrochaetae):

Annotation Number : CG1007
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638748_at
Accessions : protein= , nucleotide= NP_523876;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 00019
Interpro : primary response to X:A ratio // traceable author statement /// 0008258 // head involution // inferred from mutant phen
FlyMine data for full length.
BioGrid reports that CG1007 interacts with CG18608 CG3052 CG3827 CG5102 CG7849 CG3619 CG3619 CG10079 CG10079 CG5460 CG5460 CG5460 CG5460 CG14548 CG3340 CG3340 CG3936 CG3936 CG3936 CG3936 CG10393 CG10393 CG3411 CG3411 CG3839 CG11450 CG3978 CG4444 CG4444 CG31349 CG1004 CG1004 CG10491 CG10491 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1253 224 of 4 3.10Up
Head797 524 of 4 2.00Up
Eye1004 384 of 4 2.48Up
Thoracicoabdominal ganglion973 224 of 4 2.40Up
Salivary gland180 204 of 4 0.45Down
Crop1662 424 of 4 4.10Up
Midgut688 324 of 4 1.70Up
Tubule270 474 of 4 0.70Down
Hindgut675 154 of 4 1.70Up
Heart512 244 of 4 1.27Up
Fat body667 904 of 4 1.65Up
Ovary350 164 of 4 0.90None
Testis58 24 of 4 0.10Down
Male accessory glands209 94 of 4 0.50Down
Virgin spermatheca476 454 of 4 1.18None
Mated spermatheca844 684 of 4 2.09Up
Adult carcass420 164 of 4 1.00None
Larval CNS1305 1044 of 4 3.23Up
Larval Salivary gland195 74 of 4 0.48Down
Larval midgut605 214 of 4 1.50Up
Larval tubule758 424 of 4 1.90Up
Larval hindgut669 204 of 4 1.65Up
Larval fat body437 414 of 4 1.10None
Larval trachea778 914 of 4 1.92Up
Larval carcass539 424 of 4 1.33Up
S2 cells (growing)246 94 of 4 0.61Down
Whole fly404 274 of 4

Looking for FBgn0000575. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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