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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000579 through 18771 annotations produced 2 hits



/// phosphopyruvate hydratase (CG31287 /// Eno):

Annotation Number : CG31287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051287
Gbrowse : chr3R:12029092-12029980 (+) // 100.0 //
Probeset : 1640426_at
Accessions : protein= NP_732119;, nucleotide= NM_169708;
Pathway : 0000015 // phosphopyruvate hydratase complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004634 // phosphopyruvate hydratase activit
FlyMine data for FBgn0051287.
VDRC has 3 RNAi stocks for FBgn0051287 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 02 of 4 0.00Down
Head9 04 of 4 0.10Down
Eye7 03 of 4 0.04Down
Thoracicoabdominal ganglion12 13 of 4 0.10Down
Salivary gland15 31 of 4 0.09Down
Crop7 13 of 4 0.00Down
Midgut4 01 of 4 0.00Down
Tubule9 12 of 4 0.10Down
Hindgut7 10 of 4 0.00Down
Heart121 154 of 4 0.68None
Fat body45 124 of 4 0.25Down
Ovary4 01 of 4 0.00Down
Testis1693 424 of 4 9.50Up
Male accessory glands10 12 of 4 0.10Down
Virgin spermatheca10 24 of 4 0.06Down
Mated spermatheca10 24 of 4 0.06Down
Adult carcass35 44 of 4 0.20Down
Larval CNS7 23 of 4 0.04Down
Larval Salivary gland8 21 of 4 0.05Down
Larval midgut17 14 of 4 0.10Down
Larval tubule14 14 of 4 0.10Down
Larval hindgut12 14 of 4 0.07Down
Larval fat body266 1424 of 4 1.50None
Larval trachea30 154 of 4 0.17Down
Larval carcass16 14 of 4 0.09Down
S2 cells (growing)4 11 of 4 0.03Down
Whole fly178 204 of 4



phosphopyruvate hydratase (Eno):

Annotation Number : CG17654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000579
Gbrowse : chr2L:1724970-1729629 (-) // 100.0 //
Probeset : 1634065_s_at
Accessions : protein= NP_001162853; /// NP_477421; /// NP_722721; /// NP_722722; /// NP_722723; /// NP_722724;, nucleotide= NM_001169382; /// NM_058073; /// NM_164431; /// NM_164432; /// NM_164433; /// NM_164434;
Pathway : 0000015 // phosphopyruvate hydratase complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004634 // phosphopyruvate hydratase activit
FlyMine data for FBgn0000579.
Homophila reports that CG17654 is a close match (1e-170) to human gene ENO3 (NP_443739), a gene associated with Enolase-beta deficiency (3).
BioGrid reports that CG17654 interacts with CG2540 CG3308 CG4314 CG4853 CG6707 CG7352 Dmel CG14425 .
TRiP has 2 RNAi stocks for FBgn0000579 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000579 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2054 624 of 4 0.90Down
Head2501 694 of 4 1.10None
Eye2842 644 of 4 1.22Up
Thoracicoabdominal ganglion2565 944 of 4 1.10None
Salivary gland4581 1354 of 4 1.97Up
Crop2729 1154 of 4 1.20Up
Midgut1646 464 of 4 0.70Down
Tubule2158 394 of 4 0.90Down
Hindgut3133 844 of 4 1.30Up
Heart3610 1774 of 4 1.55Up
Fat body3663 4454 of 4 1.58Up
Ovary1802 184 of 4 0.80Down
Testis959 224 of 4 0.40Down
Male accessory glands1645 474 of 4 0.70Down
Virgin spermatheca3402 974 of 4 1.46Up
Mated spermatheca3312 1884 of 4 1.43Up
Adult carcass4287 2464 of 4 1.80Up
Larval CNS1929 1204 of 4 0.83Down
Larval Salivary gland2022 684 of 4 0.87Down
Larval midgut1266 364 of 4 0.54Down
Larval tubule1616 744 of 4 0.70Down
Larval hindgut1904 484 of 4 0.82Down
Larval fat body1834 1614 of 4 0.80Down
Larval trachea1752 1314 of 4 0.75Down
Larval carcass4135 3604 of 4 1.78Up
S2 cells (growing)2257 184 of 4 0.97None
Whole fly2323 604 of 4

Looking for FBgn0000579. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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