Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000588 through 18771 annotations produced 1 hits



extra sex combs (esc):

Annotation Number : CG14941
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000588
Gbrowse : chr2L:11827179-11829402 (-) // 100.0 //
Probeset : 1623519_at
Accessions : protein= NP_477431;, nucleotide= NM_058083;
Pathway : 0000790 // nuclear chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred fro
FlyMine data for FBgn0000588.
BioGrid reports that CG14941 interacts with CG17358 CG5701 CG8787 CG6502 CG5109 CG3886 CG18412 CG8573 CG8573 CG2759 CG2759 CG2759 CG2759 CG3757 CG5109 CG8013 CG6502 CG7471 CG8013 CG7471 CG7471 CG6502 CG6502 CG7471 CG4236 .
TRiP has 2 RNAi stocks for FBgn0000588 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000588 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.00Down
Head13 02 of 4 0.10Down
Eye16 24 of 4 0.11Down
Thoracicoabdominal ganglion8 01 of 4 0.10Down
Salivary gland23 51 of 4 0.15Down
Crop16 01 of 4 0.10Down
Midgut29 22 of 4 0.20Down
Tubule18 31 of 4 0.10Down
Hindgut22 24 of 4 0.10Down
Heart19 14 of 4 0.13Down
Fat body22 62 of 4 0.15Down
Ovary527 124 of 4 3.50Up
Testis24 14 of 4 0.20Down
Male accessory glands12 20 of 4 0.10Down
Virgin spermatheca31 24 of 4 0.21Down
Mated spermatheca40 24 of 4 0.26Down
Adult carcass29 61 of 4 0.20Down
Larval CNS130 84 of 4 0.86Down
Larval Salivary gland90 64 of 4 0.60Down
Larval midgut35 34 of 4 0.23Down
Larval tubule25 33 of 4 0.20Down
Larval hindgut38 14 of 4 0.25Down
Larval fat body26 13 of 4 0.20Down
Larval trachea84 114 of 4 0.56Down
Larval carcass53 54 of 4 0.35Down
S2 cells (growing)140 44 of 4 0.93None
Whole fly151 34 of 4

Looking for FBgn0000588. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime