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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000591 through 18771 annotations produced 1 hits



Enhancer of split m8 (E(spl)):

Annotation Number : CG8365
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000591
Gbrowse : chr3R:21866045-21866585 (+) // 100.0 //
Probeset : 1629966_at
Accessions : protein= NP_524513;, nucleotide= NM_079789;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0000591.
BioGrid reports that CG8365 interacts with CG8384 CG5460 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3497 CG10393 CG7147 CG3839 CG3839 CG3839 CG3839 CG32120 .
TRiP has 1 RNAi stocks for FBgn0000591 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000591 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.50None
Head1 ± 00 of 4 1.50None
Eye0 ± 00 of 4 0.55None
Thoracicoabdominal ganglion0 ± 00 of 4 0.50None
Salivary gland1 ± 00 of 4 1.12None
Crop2 ± 10 of 4 2.20None
Midgut0 ± 00 of 4 0.90None
Tubule1 ± 00 of 4 1.30None
Hindgut3 ± 10 of 4 3.50None
Heart0 ± 00 of 4 0.81None
Fat body2 ± 10 of 4 2.33None
Ovary0 ± 00 of 4 0.90None
Testis1 ± 00 of 4 1.40None
Male accessory glands0 ± 00 of 4 0.80None
Virgin spermatheca0 ± 00 of 4 0.71None
Mated spermatheca0 ± 00 of 4 0.79None
Adult carcass1 ± 00 of 4 1.00None
Larval CNS106 ± 84 of 4101.50Up
Larval Salivary gland1 ± 00 of 4 1.40None
Larval midgut0 ± 00 of 4 0.71None
Larval tubule0 ± 00 of 4 0.50None
Larval hindgut0 ± 00 of 4 0.81None
Larval fat body4 ± 10 of 4 4.70None
Larval trachea1 ± 00 of 4 1.55None
Larval carcass6 ± 30 of 4 6.02None
S2 cells (growing)0 ± 00 of 4 0.93None
Whole fly1 ± 00 of 4

Looking for FBgn0000591. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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