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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000606 through 18771 annotations produced 1 hits



chr2R:5865095-5868284 (+) // 100.0 // (even-skipped):

Annotation Number : CG2328
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1622897_at
Accessions : protein= , nucleotide= NP_523670;
Pathway : "0001709 // cell fate determination // non-traceable author statement /// 0006350 // transcription // inferred from elec
Interpro : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG2328 is a close match (3e-12) to human gene HOXA2 (NP_006726), a gene associated with Microtia, hearing impairment, and cleft palate, 612290 (3).
BioGrid reports that CG2328 interacts with CG6964 CG4846 CG2047 CG8384 CG7981 CG7981 CG1322 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 00 of 4 1.10None
Head7 20 of 4 1.00None
Eye3 10 of 4 0.41Down
Thoracicoabdominal ganglion14 21 of 4 1.90None
Salivary gland9 50 of 4 1.29None
Crop9 00 of 4 1.30None
Midgut7 30 of 4 1.00None
Tubule6 10 of 4 0.90None
Hindgut9 20 of 4 1.20None
Heart4 10 of 4 0.58None
Fat body20 81 of 4 2.72Up
Ovary5 10 of 4 0.70None
Testis6 20 of 4 0.90None
Male accessory glands7 30 of 4 1.00None
Virgin spermatheca7 10 of 4 0.96None
Mated spermatheca7 20 of 4 1.04None
Adult carcass10 20 of 4 1.40None
Larval CNS19 44 of 4 2.60Up
Larval Salivary gland10 21 of 4 1.36None
Larval midgut10 10 of 4 1.37None
Larval tubule9 00 of 4 1.20None
Larval hindgut12 21 of 4 1.59None
Larval fat body18 23 of 4 2.40Up
Larval trachea6 31 of 4 0.92None
Larval carcass18 10 of 4 2.45Up
S2 cells (growing)6 10 of 4 0.88None
Whole fly7 00 of 4

Looking for FBgn0000606. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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