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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000615 through 18771 annotations produced 2 hits



exuperantia (exu):

Annotation Number : CG8994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000615
Gbrowse : chr2R:16554929-16557882 (-) // 100.0 //
Probeset : 1633180_at
Accessions : protein= NP_001163218; /// NP_725995; /// NP_725996; /// NP_725997;, nucleotide= NM_001169747; /// NM_166410; /// NM_166411; /// NM_166412;
Pathway : via spliceosome // inferred by curator /// 0001700 // embryonic development via the syncytial blastoderm // inferred fr
Interpro : embryo // inferred from genetic interaction /// 0045450 // bicoid mRNA localization // inferred from expression pattern
FlyMine data for FBgn0000615.
BDGP gene expression has embryonic in situ data for exu: 14 pix of staining in 5 body parts.
TRiP has 2 RNAi stocks for FBgn0000615 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000615 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head7 20 of 4 0.00Down
Eye3 00 of 4 0.00Down
Thoracicoabdominal ganglion5 20 of 4 0.00Down
Salivary gland3 10 of 4 0.00Down
Crop4 10 of 4 0.00Down
Midgut4 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart3 10 of 4 0.00Down
Fat body1 10 of 4 0.00Down
Ovary29 24 of 4 0.00Down
Testis3415 2034 of 4 5.00Up
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca3 10 of 4 0.00Down
Mated spermatheca6 20 of 4 0.01Down
Adult carcass23 71 of 4 0.00Down
Larval CNS4 10 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut14 23 of 4 0.02Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.00Down
Larval fat body857 4094 of 4 1.30None
Larval trachea14 231 of 4 0.02Down
Larval carcass8 41 of 4 0.01Down
S2 cells (growing)111 44 of 4 0.16Down
Whole fly680 434 of 4



exuperantia (exu):

Annotation Number : CG8994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000615
Gbrowse : chr2R:16555854-16558650 (-) // 100.0 //
Probeset : 1639059_s_at
Accessions : protein= NP_001163218; /// NP_725995; /// NP_725996; /// NP_725997;, nucleotide= NM_001169747; /// NM_166410; /// NM_166411; /// NM_166412;
Pathway : via spliceosome // inferred by curator /// 0001700 // embryonic development via the syncytial blastoderm // inferred fr
Interpro : embryo // inferred from genetic interaction /// 0045450 // bicoid mRNA localization // inferred from expression pattern
FlyMine data for FBgn0000615.
BDGP gene expression has embryonic in situ data for exu: 14 pix of staining in 5 body parts.
TRiP has 2 RNAi stocks for FBgn0000615 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000615 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head6 00 of 4 0.00Down
Eye1 00 of 4 0.00Down
Thoracicoabdominal ganglion5 00 of 4 0.00Down
Salivary gland16 60 of 4 0.02Down
Crop5 21 of 4 0.00Down
Midgut40 43 of 4 0.00Down
Tubule38 124 of 4 0.00Down
Hindgut13 12 of 4 0.00Down
Heart9 12 of 4 0.01Down
Fat body14 61 of 4 0.02Down
Ovary1696 214 of 4 1.70Up
Testis1789 874 of 4 1.80Up
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca27 34 of 4 0.03Down
Mated spermatheca12 11 of 4 0.01Down
Adult carcass42 124 of 4 0.00Down
Larval CNS2 10 of 4 0.00Down
Larval Salivary gland9 21 of 4 0.01Down
Larval midgut36 54 of 4 0.04Down
Larval tubule56 14 of 4 0.10Down
Larval hindgut23 34 of 4 0.02Down
Larval fat body332 1244 of 4 0.30Down
Larval trachea8 91 of 4 0.01Down
Larval carcass12 01 of 4 0.01Down
S2 cells (growing)70 24 of 4 0.07Down
Whole fly980 444 of 4

Looking for FBgn0000615. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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