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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000618 through 18771 annotations produced 1 hits



enhancer of yellow 2 (e(y)2):

Annotation Number : CG15191
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000618
Gbrowse : chrX:11470147-11470628 (-) // 100.0 //
Probeset : 1640161_at
Accessions : protein= NP_524846;, nucleotide= NM_080107;
Pathway : 0000124 // SAGA complex // inferred from physical interaction /// 0000124 // SAGA complex // inferred from direct assay
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 //
FlyMine data for FBgn0000618.
BioGrid reports that CG15191 interacts with CG11387 CG3827 CG3757 CG3757 CG7803 .
TRiP has 1 RNAi stocks for FBgn0000618 available for purchase.
VDRC has 4 RNAi stocks for FBgn0000618 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 ± 44 of 4 0.80Down
Head105 ± 34 of 4 0.90None
Eye118 ± 34 of 4 1.01None
Thoracicoabdominal ganglion113 ± 44 of 4 1.00None
Salivary gland223 ± 54 of 4 1.91Up
Crop146 ± 34 of 4 1.30Up
Midgut80 ± 44 of 4 0.70Down
Tubule67 ± 14 of 4 0.60Down
Hindgut89 ± 14 of 4 0.80Down
Heart120 ± 54 of 4 1.03None
Fat body109 ± 104 of 4 0.93None
Ovary201 ± 34 of 4 1.70Up
Testis50 ± 14 of 4 0.40Down
Male accessory glands236 ± 74 of 4 2.00Up
Virgin spermatheca183 ± 24 of 4 1.57Up
Mated spermatheca199 ± 134 of 4 1.71Up
Adult carcass87 ± 34 of 4 0.70Down
Larval CNS297 ± 134 of 4 2.55Up
Larval Salivary gland267 ± 74 of 4 2.29Up
Larval midgut96 ± 54 of 4 0.83Down
Larval tubule140 ± 64 of 4 1.20Up
Larval hindgut108 ± 54 of 4 0.93None
Larval fat body172 ± 174 of 4 1.50Up
Larval trachea271 ± 224 of 4 2.33Up
Larval carcass156 ± 74 of 4 1.34Up
S2 cells (growing)150 ± 14 of 4 1.29Up
Whole fly116 ± 44 of 4

Looking for FBgn0000618. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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