FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000636 through 18771 annotations produced 3 hits

Fasciclin III (Fas3):

Annotation Number : CG5803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000636
Gbrowse : chr2L:18320100-18392575 (+) // 99.4 //
Probeset : 1641473_at
Accessions : protein= NP_001097173; /// NP_001097174; /// NP_001163005; /// NP_724106; /// NP_724107;, nucleotide= NM_001103703; /// NM_001103704; /// NM_001169534; /// NM_165249; /// NM_165250;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement //
FlyMine data for FBgn0000636.
BDGP gene expression has embryonic in situ data for Fas3: 30 pix of staining in 24 body parts.
BioGrid reports that CG5803 interacts with CG9572 CG11579 CG5490 .
VDRC has 8 RNAi stocks for FBgn0000636 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 1	4 of 4	1.50	None
Head	10 ± 1	2 of 4	1.50	None
Eye	11 ± 3	3 of 4	1.59	None
Thoracicoabdominal ganglion	6 ± 0	2 of 4	0.90	None
Salivary gland	9 ± 4	0 of 4	1.27	None
Crop	9 ± 0	3 of 4	1.40	None
Midgut	2 ± 1	0 of 4	0.30	None
Tubule	3 ± 0	0 of 4	0.50	Down
Hindgut	9 ± 2	3 of 4	1.40	None
Heart	3 ± 1	0 of 4	0.48	None
Fat body	4 ± 2	0 of 4	0.56	None
Ovary	5 ± 0	1 of 4	0.70	None
Testis	12 ± 1	4 of 4	1.70	None
Male accessory glands	6 ± 2	0 of 4	0.90	None
Virgin spermatheca	5 ± 0	0 of 4	0.76	None
Mated spermatheca	8 ± 2	1 of 4	1.22	None
Adult carcass	9 ± 1	0 of 4	1.40	None
Larval CNS	17 ± 5	4 of 4	2.41	Up
Larval Salivary gland	10 ± 2	1 of 4	1.42	None
Larval midgut	4 ± 0	0 of 4	0.56	None
Larval tubule	3 ± 0	0 of 4	0.50	None
Larval hindgut	10 ± 1	2 of 4	1.42	None
Larval fat body	5 ± 1	0 of 4	0.80	None
Larval trachea	19 ± 2	4 of 4	2.78	Up
Larval carcass	7 ± 1	2 of 4	1.02	None
S2 cells (growing)	2 ± 0	0 of 4	0.29	Down
Whole fly	7 ± 1	2 of 4

Fasciclin III (Fas3):

Annotation Number : CG5803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000636
Gbrowse : chr2L:18320100-18392575 (+) // 99.29 //
Probeset : 1628543_a_at
Accessions : protein= NP_001097173; /// NP_001097174; /// NP_001163005; /// NP_724106; /// NP_724107;, nucleotide= NM_001103703; /// NM_001103704; /// NM_001169534; /// NM_165249; /// NM_165250;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement //
FlyMine data for FBgn0000636.
BDGP gene expression has embryonic in situ data for Fas3: 30 pix of staining in 24 body parts.
BioGrid reports that CG5803 interacts with CG9572 CG11579 CG5490 .
VDRC has 8 RNAi stocks for FBgn0000636 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	84 ± 5	4 of 4	2.30	Up
Head	50 ± 4	4 of 4	1.40	None
Eye	59 ± 5	4 of 4	1.62	Up
Thoracicoabdominal ganglion	40 ± 2	4 of 4	1.10	None
Salivary gland	47 ± 7	1 of 4	1.30	None
Crop	68 ± 4	4 of 4	1.90	Up
Midgut	23 ± 2	3 of 4	0.60	Down
Tubule	15 ± 0	2 of 4	0.40	Down
Hindgut	69 ± 2	4 of 4	1.90	Up
Heart	9 ± 1	3 of 4	0.26	Down
Fat body	6 ± 6	0 of 4	0.18	Down
Ovary	24 ± 0	4 of 4	0.70	Down
Testis	50 ± 1	4 of 4	1.40	Up
Male accessory glands	56 ± 8	4 of 4	1.50	None
Virgin spermatheca	8 ± 2	0 of 4	0.23	Down
Mated spermatheca	21 ± 1	0 of 4	0.58	Down
Adult carcass	40 ± 3	4 of 4	1.10	None
Larval CNS	124 ± 3	4 of 4	3.37	Up
Larval Salivary gland	75 ± 5	4 of 4	2.06	Up
Larval midgut	26 ± 2	4 of 4	0.71	Down
Larval tubule	27 ± 2	4 of 4	0.70	Down
Larval hindgut	118 ± 8	4 of 4	3.21	Up
Larval fat body	13 ± 4	0 of 4	0.40	Down
Larval trachea	146 ± 12	4 of 4	3.97	Up
Larval carcass	67 ± 6	4 of 4	1.84	Up
S2 cells (growing)	2 ± 0	0 of 4	0.06	Down
Whole fly	36 ± 1	4 of 4

Fasciclin III (Fas3):

Annotation Number : CG31749
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000636
Gbrowse : chr2L:18386313-18387104 (+) // 100.0 //
Probeset : 1627962_at
Accessions : protein= NP_001097173; /// NP_001097174; /// NP_001163005; /// NP_724106; /// NP_724107;, nucleotide= NM_001103703; /// NM_001103704; /// NM_001169534; /// NM_165249; /// NM_165250;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement //
FlyMine data for FBgn0000636.
BDGP gene expression has embryonic in situ data for Fas3: 30 pix of staining in 24 body parts.
VDRC has 8 RNAi stocks for FBgn0000636 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	3 of 4	0.10	Down
Head	123 ± 4	4 of 4	1.20	None
Eye	182 ± 22	4 of 4	1.76	Up
Thoracicoabdominal ganglion	7 ± 0	2 of 4	0.10	Down
Salivary gland	135 ± 11	4 of 4	1.30	None
Crop	325 ± 8	4 of 4	3.10	Up
Midgut	21 ± 0	4 of 4	0.20	Down
Tubule	17 ± 1	4 of 4	0.20	Down
Hindgut	362 ± 11	4 of 4	3.50	Up
Heart	22 ± 3	4 of 4	0.21	Down
Fat body	22 ± 4	4 of 4	0.21	Down
Ovary	83 ± 4	4 of 4	0.80	None
Testis	76 ± 3	4 of 4	0.70	None
Male accessory glands	330 ± 21	4 of 4	3.20	Up
Virgin spermatheca	157 ± 8	4 of 4	1.52	Up
Mated spermatheca	283 ± 34	4 of 4	2.73	Up
Adult carcass	81 ± 2	4 of 4	0.80	None
Larval CNS	69 ± 3	4 of 4	0.67	Down
Larval Salivary gland	452 ± 24	4 of 4	4.35	Up
Larval midgut	45 ± 2	4 of 4	0.44	Down
Larval tubule	18 ± 2	4 of 4	0.20	Down
Larval hindgut	903 ± 46	4 of 4	8.70	Up
Larval fat body	6 ± 2	1 of 4	0.10	Down
Larval trachea	879 ± 60	4 of 4	8.47	Up
Larval carcass	496 ± 16	4 of 4	4.78	Up
S2 cells (growing)	2 ± 0	0 of 4	0.03	Down
Whole fly	103 ± 10	4 of 4

Looking for FBgn0000636. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720