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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000640 through 18771 annotations produced 1 hits



fat body protein P6 (Fbp2):

Annotation Number : CG3763
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000640
Gbrowse : chr2L:9426871-9427836 (+) // 100.0 //
Probeset : 1640035_at
Accessions : protein= NP_523522;, nucleotide= NM_078798;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity
FlyMine data for FBgn0000640.
BDGP gene expression has embryonic in situ data for Fbp2: 4 pix of staining in 1 body parts.
Homophila reports that CG3763 is a close match (4e-21) to human gene (NP_000851), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0000640 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.10None
Head5 ± 00 of 4 2.10None
Eye5 ± 11 of 4 1.92None
Thoracicoabdominal ganglion2 ± 00 of 4 0.90None
Salivary gland3 ± 10 of 4 1.30None
Crop2 ± 00 of 4 1.10None
Midgut7 ± 20 of 4 2.90None
Tubule9 ± 01 of 4 3.40Up
Hindgut3 ± 10 of 4 1.20None
Heart15 ± 111 of 4 5.84None
Fat body8 ± 41 of 4 3.03None
Ovary0 ± 00 of 4 0.30None
Testis4 ± 00 of 4 1.70None
Male accessory glands8 ± 20 of 4 3.00None
Virgin spermatheca8 ± 22 of 4 3.11None
Mated spermatheca10 ± 42 of 4 3.96None
Adult carcass2 ± 10 of 4 1.10None
Larval CNS9 ± 32 of 4 3.55Up
Larval Salivary gland948 ± 624 of 4357.94Up
Larval midgut10 ± 11 of 4 3.93Up
Larval tubule252 ± 1364 of 495.10None
Larval hindgut681 ± 3324 of 4257.19None
Larval fat body9754 ± 10814 of 43680.90Up
Larval trachea264 ± 1804 of 499.68None
Larval carcass143 ± 304 of 454.11Up
S2 cells (growing)1 ± 00 of 4 0.43None
Whole fly2 ± 10 of 4

Looking for FBgn0000640. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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