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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000640 through 18771 annotations produced 1 hits

fat body protein P6 (Fbp2):

Annotation Number : CG3763
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000640
Gbrowse : chr2L:9426871-9427836 (+) // 100.0 //
Probeset : 1640035_at
Accessions : protein= NP_523522;, nucleotide= NM_078798;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity
FlyMine data for FBgn0000640.
BDGP gene expression has embryonic in situ data for Fbp2: 4 pix of staining in 1 body parts.
Homophila reports that CG3763 is a close match (4e-21) to human gene (NP_000851), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0000640 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 1.10None
Head5 00 of 4 2.10None
Eye5 11 of 4 1.92None
Thoracicoabdominal ganglion2 00 of 4 0.90None
Salivary gland3 10 of 4 1.30None
Crop2 00 of 4 1.10None
Midgut7 20 of 4 2.90None
Tubule9 01 of 4 3.40Up
Hindgut3 10 of 4 1.20None
Heart15 111 of 4 5.84None
Fat body8 41 of 4 3.03None
Ovary0 00 of 4 0.30None
Testis4 00 of 4 1.70None
Male accessory glands8 20 of 4 3.00None
Virgin spermatheca8 22 of 4 3.11None
Mated spermatheca10 42 of 4 3.96None
Adult carcass2 10 of 4 1.10None
Larval CNS9 32 of 4 3.55Up
Larval Salivary gland948 624 of 4357.94Up
Larval midgut10 11 of 4 3.93Up
Larval tubule252 1364 of 495.10None
Larval hindgut681 3324 of 4257.19None
Larval fat body9754 10814 of 43680.90Up
Larval trachea264 1804 of 499.68None
Larval carcass143 304 of 454.11Up
S2 cells (growing)1 00 of 4 0.43None
Whole fly2 10 of 4

Looking for FBgn0000640. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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