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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000658 through 18771 annotations produced 1 hits



chr2R:14120267-14123819 (+) // 100.0 // (four-jointed):

Annotation Number : CG10917
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636091_at
Accessions : protein= , nucleotide= NP_477483;
Pathway : "0001736 // establishment of planar polarity // traceable author statement /// 0001737 // establishment of imaginal disc
Interpro : imaginal disc // non-traceable author statement /// 0007474 // imaginal disc-derived wing vein specification // inferre
FlyMine data for full length.
BioGrid reports that CG10917 interacts with CG11092 CG10595 CG17941 CG15112 CG6127 CG18412 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.50None
Head8 10 of 4 1.10None
Eye15 12 of 4 2.05None
Thoracicoabdominal ganglion2 00 of 4 0.30None
Salivary gland1 00 of 4 0.19None
Crop20 22 of 4 2.80Up
Midgut1 00 of 4 0.10None
Tubule3 00 of 4 0.50Down
Hindgut6 10 of 4 0.90None
Heart1 00 of 4 0.23None
Fat body1 00 of 4 0.17None
Ovary0 00 of 4 0.10None
Testis1 00 of 4 0.20None
Male accessory glands0 00 of 4 0.10None
Virgin spermatheca4 10 of 4 0.56None
Mated spermatheca3 10 of 4 0.47None
Adult carcass5 20 of 4 0.70None
Larval CNS56 74 of 4 7.55Up
Larval Salivary gland5 10 of 4 0.68None
Larval midgut2 00 of 4 0.28None
Larval tubule2 10 of 4 0.30None
Larval hindgut29 14 of 4 3.94Up
Larval fat body4 10 of 4 0.60None
Larval trachea80 84 of 410.70Up
Larval carcass59 14 of 4 7.91Up
S2 cells (growing)0 00 of 4 0.06None
Whole fly7 30 of 4

Looking for FBgn0000658. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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