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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000662 through 18771 annotations produced 1 hits



chr2R:9707128-9712059 (-) // 100.0 // (female lethal d):

Annotation Number : CG6315
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632135_a_at
Accessions : protein= , nucleotide= NP_523732; /// NP_725327;
Pathway : "0000375 // RNA splicing
Interpro : via transesterification reactions // inferred from mutant phenotype /// 0000381 // regulation of alternative nuclear mR
FlyMine data for full length.
BioGrid reports that CG6315 interacts with CG6819 CG6930 CG9423 CG9426 CG10388 Dmel CG18350 CG3496 CG7935 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain318 ± 94 of 4 2.00Up
Head134 ± 104 of 4 0.80None
Eye135 ± 84 of 4 0.83None
Thoracicoabdominal ganglion218 ± 214 of 4 1.30None
Salivary gland209 ± 134 of 4 1.29Up
Crop142 ± 94 of 4 0.90None
Midgut126 ± 34 of 4 0.80Down
Tubule103 ± 74 of 4 0.60Down
Hindgut111 ± 54 of 4 0.70Down
Heart88 ± 44 of 4 0.55Down
Fat body120 ± 74 of 4 0.74Down
Ovary292 ± 64 of 4 1.80Up
Testis37 ± 14 of 4 0.20Down
Male accessory glands116 ± 94 of 4 0.70Down
Virgin spermatheca154 ± 54 of 4 0.95None
Mated spermatheca153 ± 104 of 4 0.95None
Adult carcass133 ± 144 of 4 0.80None
Larval CNS324 ± 144 of 4 2.00Up
Larval Salivary gland111 ± 34 of 4 0.69Down
Larval midgut112 ± 54 of 4 0.69Down
Larval tubule127 ± 24 of 4 0.80Down
Larval hindgut132 ± 44 of 4 0.82Down
Larval fat body103 ± 64 of 4 0.60Down
Larval trachea150 ± 124 of 4 0.93None
Larval carcass126 ± 34 of 4 0.78Down
S2 cells (growing)221 ± 74 of 4 1.37Up
Whole fly162 ± 84 of 4

Looking for FBgn0000662. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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