FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000667 through 18771 annotations produced 1 hits

Alpha-actinin (Actn):

Annotation Number : CG4376
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000667
Gbrowse : chrX:1919126-1936344 (-) // 100.0 //
Probeset : 1635252_a_at
Accessions : protein= NP_477484; /// NP_477485; /// NP_726784;, nucleotide= NM_058136; /// NM_058137; /// NM_166920;
Pathway : 0005925 // focal adhesion // inferred from sequence or structural similarity /// 0030018 // Z disc // inferred from dire
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fro
FlyMine data for FBgn0000667.
BDGP gene expression has embryonic in situ data for Actn: 22 pix of staining in 14 body parts.
Homophila reports that CG4376 is a close match (2e-13) to human gene BMD;CMD3B;DMD (NP_004001), a gene associated with Becker muscular dystrophy, 300376 (3);Cardiomyopathy, dilated, 3B, 302045 (3);Duchenne muscular dystrophy, 310200 (3).
BioGrid reports that CG4376 interacts with CG6416 CG7352 CG7417 .
TRiP has 1 RNAi stocks for FBgn0000667 available for purchase.
VDRC has 4 RNAi stocks for FBgn0000667 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	145 ± 5	4 of 4	0.40	Down
Head	240 ± 31	4 of 4	0.70	Down
Eye	101 ± 5	4 of 4	0.28	Down
Thoracicoabdominal ganglion	114 ± 10	4 of 4	0.30	Down
Salivary gland	82 ± 5	4 of 4	0.23	Down
Crop	1633 ± 78	4 of 4	4.50	Up
Midgut	101 ± 5	4 of 4	0.30	Down
Tubule	29 ± 2	2 of 4	0.10	Down
Hindgut	726 ± 15	4 of 4	2.00	Up
Heart	527 ± 89	4 of 4	1.45	None
Fat body	80 ± 8	4 of 4	0.22	Down
Ovary	283 ± 11	4 of 4	0.80	Down
Testis	44 ± 2	4 of 4	0.10	Down
Male accessory glands	208 ± 5	4 of 4	0.60	Down
Virgin spermatheca	100 ± 5	4 of 4	0.28	Down
Mated spermatheca	125 ± 7	4 of 4	0.34	Down
Adult carcass	819 ± 39	4 of 4	2.30	Up
Larval CNS	344 ± 11	4 of 4	0.95	None
Larval Salivary gland	762 ± 52	4 of 4	2.10	Up
Larval midgut	116 ± 7	4 of 4	0.32	Down
Larval tubule	90 ± 3	4 of 4	0.20	Down
Larval hindgut	1216 ± 63	4 of 4	3.35	Up
Larval fat body	107 ± 14	4 of 4	0.30	Down
Larval trachea	319 ± 119	4 of 4	0.88	None
Larval carcass	3247 ± 295	4 of 4	8.94	Up
S2 cells (growing)	195 ± 7	4 of 4	0.54	Down
Whole fly	363 ± 20	4 of 4

Looking for FBgn0000667. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720