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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000709 through 18771 annotations produced 1 hits

flightless (fliI):

Annotation Number : CG1484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000709
Gbrowse : chrX:21210822-21216117 (+) // 100.0 //
Probeset : 1640391_at
Accessions : protein= NP_525097;, nucleotide= NM_080358;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // non-traceabl
FlyMine data for FBgn0000709.
BDGP gene expression has embryonic in situ data for fliI: 4 pix of staining in 1 body parts.
Homophila reports that CG1484 is a close match (7e-11) to human gene CNA2;KERA (NP_008966), a gene associated with Cornea plana congenita, recessive, 217300 (3).
TRiP has 1 RNAi stocks for FBgn0000709 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000709 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain219 34 of 4 1.40Up
Head111 34 of 4 0.70Down
Eye79 34 of 4 0.52Down
Thoracicoabdominal ganglion199 34 of 4 1.30Up
Salivary gland154 114 of 4 1.01None
Crop162 74 of 4 1.10None
Midgut225 64 of 4 1.50Up
Tubule170 234 of 4 1.10None
Hindgut154 24 of 4 1.00None
Heart73 14 of 4 0.48Down
Fat body130 114 of 4 0.85None
Ovary350 124 of 4 2.30Up
Testis33 14 of 4 0.20Down
Male accessory glands159 114 of 4 1.00None
Virgin spermatheca220 114 of 4 1.44Up
Mated spermatheca225 74 of 4 1.47Up
Adult carcass101 74 of 4 0.70Down
Larval CNS212 144 of 4 1.39Up
Larval Salivary gland287 184 of 4 1.88Up
Larval midgut313 234 of 4 2.05Up
Larval tubule135 24 of 4 0.90None
Larval hindgut213 54 of 4 1.40Up
Larval fat body134 54 of 4 0.90None
Larval trachea144 84 of 4 0.94None
Larval carcass219 94 of 4 1.43Up
S2 cells (growing)150 34 of 4 0.98None
Whole fly153 134 of 4

Looking for FBgn0000709. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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