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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000711 through 18771 annotations produced 1 hits



chrX:10279965-10302098 (+) // 99.22 // (flapwing):

Annotation Number : CG2096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624755_a_at
Accessions : protein= , nucleotide= NP_524738; /// NP_727418;
Pathway : 0002168 // instar larval development // non-traceable author statement /// 0006470 // protein dephosphorylation // infer
Interpro : 0000164 // protein phosphatase type 1 complex // inferred from sequence or structural similarity
FlyMine data for full length.
BioGrid reports that CG2096 interacts with CG6416 CG2185 CG2608 CG2865 CG3052 CG31045 CG3262 CG4122 CG4303 CG5105 CG5792 CG6578 CG7808 CG9036 CG9070 CG10574 CG8980 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1430 ± 344 of 4 3.00Up
Head1344 ± 394 of 4 2.90Up
Eye3197 ± 1234 of 4 6.80Up
Thoracicoabdominal ganglion1850 ± 484 of 4 3.90Up
Salivary gland3724 ± 944 of 4 7.92Up
Crop1054 ± 184 of 4 2.20Up
Midgut839 ± 224 of 4 1.80Up
Tubule382 ± 224 of 4 0.80Down
Hindgut775 ± 144 of 4 1.70Up
Heart714 ± 574 of 4 1.52Up
Fat body308 ± 544 of 4 0.66Down
Ovary468 ± 64 of 4 1.00None
Testis153 ± 84 of 4 0.30Down
Male accessory glands1304 ± 104 of 4 2.80Up
Virgin spermatheca717 ± 224 of 4 1.53Up
Mated spermatheca739 ± 374 of 4 1.57Up
Adult carcass449 ± 54 of 4 1.00None
Larval CNS601 ± 364 of 4 1.28Up
Larval Salivary gland389 ± 114 of 4 0.83Down
Larval midgut1050 ± 524 of 4 2.24Up
Larval tubule492 ± 84 of 4 1.00None
Larval hindgut629 ± 64 of 4 1.34Up
Larval fat body243 ± 264 of 4 0.50Down
Larval trachea492 ± 884 of 4 1.05None
Larval carcass668 ± 294 of 4 1.42Up
S2 cells (growing)514 ± 134 of 4 1.09None
Whole fly470 ± 244 of 4

Looking for FBgn0000711. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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