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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000715 through 18771 annotations produced 1 hits

FMRFamide (Fmrf):

Annotation Number : CG2346
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000715
Gbrowse : chr2R:5793795-5797969 (+) // 100.0 //
Probeset : 1631246_at
Accessions : protein= NP_523669;, nucleotide= NM_078945;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005179 // hormone activity // non-traceable author statement /// 0005184 // neuropeptide hormone activity // non-tracea
FlyMine data for FBgn0000715.
BDGP gene expression has embryonic in situ data for Fmrf: 15 pix of staining in 2 body parts.
BioGrid reports that CG2346 interacts with CG4394 .
TRiP has 1 RNAi stocks for FBgn0000715 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000715 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain317 104 of 411.90Up
Head57 24 of 4 2.20Up
Eye0 00 of 4 0.04Down
Thoracicoabdominal ganglion3250 1004 of 4121.80Up
Salivary gland3 10 of 4 0.14Down
Crop0 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart0 00 of 4 0.02Down
Fat body3 20 of 4 0.11Down
Ovary1 00 of 4 0.10Down
Testis3 10 of 4 0.10Down
Male accessory glands3 20 of 4 0.10Down
Virgin spermatheca0 00 of 4 0.03Down
Mated spermatheca0 00 of 4 0.02Down
Adult carcass17 40 of 4 0.70None
Larval CNS358 574 of 413.43Up
Larval Salivary gland2 00 of 4 0.07Down
Larval midgut1 00 of 4 0.04Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.02Down
Larval fat body2 00 of 4 0.10Down
Larval trachea1 10 of 4 0.06Down
Larval carcass0 00 of 4 0.03Down
S2 cells (growing)2 10 of 4 0.08Down
Whole fly26 43 of 4

Looking for FBgn0000715. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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