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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000719 through 18771 annotations produced 1 hits



folded gastrulation (fog):

Annotation Number : CG9559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000719
Gbrowse : chrX:22227989-22231117 (-) // 100.0 //
Probeset : 1638345_at
Accessions : protein= NP_001033860; /// NP_523438;, nucleotide= NM_001038771; /// NM_078714;
Pathway : heterochronic // inferred from mutant phenotype"
Interpro : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
FlyMine data for FBgn0000719.
BioGrid reports that CG9559 interacts with CG9635 CG2956 .
TRiP has 1 RNAi stocks for FBgn0000719 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000719 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain298 124 of 4 2.90Up
Head153 64 of 4 1.50Up
Eye89 64 of 4 0.88None
Thoracicoabdominal ganglion330 184 of 4 3.20Up
Salivary gland202 104 of 4 1.97Up
Crop189 104 of 4 1.90Up
Midgut67 34 of 4 0.70Down
Tubule129 134 of 4 1.30Up
Hindgut96 54 of 4 0.90None
Heart103 64 of 4 1.01None
Fat body105 74 of 4 1.03None
Ovary302 74 of 4 3.00Up
Testis12 04 of 4 0.10Down
Male accessory glands45 24 of 4 0.40Down
Virgin spermatheca124 34 of 4 1.22Up
Mated spermatheca149 54 of 4 1.46Up
Adult carcass90 54 of 4 0.90None
Larval CNS190 284 of 4 1.86Up
Larval Salivary gland197 94 of 4 1.93Up
Larval midgut37 24 of 4 0.37Down
Larval tubule93 54 of 4 0.90None
Larval hindgut109 84 of 4 1.07None
Larval fat body499 274 of 4 4.90Up
Larval trachea101 164 of 4 1.00None
Larval carcass278 264 of 4 2.72Up
S2 cells (growing)448 124 of 4 4.38Up
Whole fly102 44 of 4

Looking for FBgn0000719. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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