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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000808 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chrX:11879568-11881780 (-) // 100.0 //):

Annotation Number : CG1505
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr1-36.78
Gbrowse :
Probeset : 1629485_at
Accessions : protein= EC:3.4.-.- /// EC:3.4.21.-, nucleotide=
Interpro : "0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement
FlyMine data for chr1-36.78.
Homophila reports that CG1505 is a close match (7e-11) to human gene PLAU;URK (NP_002649), a gene associated with {Alzheimer disease, late-onset, susceptibility to}, 104300 (3).
BioGrid reports that CG1505 interacts with CG10129 CG9614 CG7996 CG7996 CG7225 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.30Down
Head2 ± 10 of 4 0.20Down
Eye1 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland10 ± 20 of 4 0.84None
Crop2 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.20Down
Hindgut2 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.10Down
Fat body2 ± 30 of 4 0.19Down
Ovary28 ± 14 of 4 2.30Up
Testis2 ± 10 of 4 0.20Down
Male accessory glands2 ± 10 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.23Down
Mated spermatheca6 ± 20 of 4 0.49None
Adult carcass3 ± 10 of 4 0.30Down
Larval CNS8 ± 20 of 4 0.67None
Larval Salivary gland5 ± 10 of 4 0.41Down
Larval midgut2 ± 00 of 4 0.20Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.13Down
Larval fat body6 ± 20 of 4 0.50Down
Larval trachea0 ± 00 of 4 0.04Down
Larval carcass1 ± 00 of 4 0.08Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly12 ± 10 of 4

Looking for FBgn0000808. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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