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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000826 through 18771 annotations produced 1 hits


pan gu (png):

Annotation Number : CG11420
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000826
Gbrowse : chrX:1250520-1251646 (-) // 100.0 //
Probeset : 1638329_at
Accessions : protein= NP_477492;, nucleotide= NM_058144;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase
FlyMine data for FBgn0000826.
BDGP gene expression has embryonic in situ data for png: 4 pix of staining in 1 body parts.
Homophila reports that CG11420 is a close match (9e-11) to human gene ACVRLK3;ALK3;BMPR1A (NP_004320), a gene associated with Juvenile polyposis syndrome, infantile form, 174900 (3);Polyposis syndrome, hereditary mixed, 2, 610069 (3);Polyposis, juvenile intestinal, 174900 (3).
BioGrid reports that CG11420 interacts with CG4730 CG5121 CG5940 CG3510 CG3510 CG5814 CG3938 CG5650 CG1772 CG3186 CG5272 CG7109 CG15043 CG15676 CG11182 CG3629 CG7948 CG5568 CG15218 CG1034 CG2189 CG11266 CG3938 CG1120 CG9373 CG8823 CG4394 CG4771 CG32169 CG3093 CG9027 CG11759 CG8181 .
TRiP has 2 RNAi stocks for FBgn0000826 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland12 ± 30 of 4 0.10Down
Crop6 ± 00 of 4 0.10Down
Midgut4 ± 10 of 4 0.00Down
Tubule11 ± 20 of 4 0.10Down
Hindgut7 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.03Down
Fat body3 ± 20 of 4 0.03Down
Ovary265 ± 44 of 4 2.20Up
Testis3 ± 10 of 4 0.00Down
Male accessory glands6 ± 10 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca2 ± 10 of 4 0.02Down
Adult carcass9 ± 40 of 4 0.10Down
Larval CNS10 ± 44 of 4 0.09Down
Larval Salivary gland4 ± 10 of 4 0.04Down
Larval midgut8 ± 10 of 4 0.07Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut9 ± 10 of 4 0.08Down
Larval fat body2 ± 10 of 4 0.00Down
Larval trachea13 ± 41 of 4 0.11Down
Larval carcass8 ± 20 of 4 0.07Down
S2 cells (growing)41 ± 14 of 4 0.34Down
Whole fly121 ± 124 of 4

Looking for FBgn0000826. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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