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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000927 through 18771 annotations produced 1 hits


young arrest (fs(1)Ya):

Annotation Number : CG2707
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000927
Gbrowse : chrX:2618318-2620614 (+) // 100.0 //
Probeset : 1639097_at
Accessions : protein= NP_477493;, nucleotide= NM_058145;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0000927.
BioGrid reports that CG2707 interacts with CG7490 .
VDRC has 2 RNAi stocks for FBgn0000927 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye5 ± 20 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 20 of 4 0.00Down
Salivary gland21 ± 70 of 4 0.07Down
Crop4 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule31 ± 53 of 4 0.10Down
Hindgut3 ± 10 of 4 0.00Down
Heart6 ± 00 of 4 0.02Down
Fat body8 ± 30 of 4 0.03Down
Ovary644 ± 64 of 4 2.00Up
Testis3 ± 10 of 4 0.00Down
Male accessory glands6 ± 30 of 4 0.00Down
Virgin spermatheca21 ± 11 of 4 0.07Down
Mated spermatheca14 ± 30 of 4 0.04Down
Adult carcass20 ± 101 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland4 ± 20 of 4 0.01Down
Larval midgut4 ± 10 of 4 0.01Down
Larval tubule10 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.01Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)4 ± 00 of 4 0.01Down
Whole fly323 ± 194 of 4

Looking for FBgn0000927. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime