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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001075 through 18771 annotations produced 1 hits



fat (ft):

Annotation Number : CG3352
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001075
Gbrowse : chr2L:4198401-4217852 (-) // 100.0 //
Probeset : 1624125_at
Accessions : protein= NP_477497;, nucleotide= NM_058149;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035329 // hippo signaling cascade // inferred from genetic
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
FlyMine data for FBgn0001075.
BDGP gene expression has embryonic in situ data for ft: 18 pix of staining in 16 body parts.
Homophila reports that CG3352 is a close match (7e-11) to human gene CUBN;IFCR;MGA1 (NP_001072), a gene associated with Megaloblastic anemia-1, Finnish type, 261100 (3).
BioGrid reports that CG3352 interacts with CG11579 CG9885 CG17941 CG17697 CG17697 CG17697 CG17697 CG6246 CG3830 .
TRiP has 3 RNAi stocks for FBgn0001075 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001075 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 01 of 4 0.10Down
Head20 14 of 4 0.70None
Eye22 24 of 4 0.81None
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland14 42 of 4 0.52None
Crop20 24 of 4 0.70None
Midgut5 11 of 4 0.20Down
Tubule23 34 of 4 0.80None
Hindgut6 02 of 4 0.20Down
Heart6 12 of 4 0.24Down
Fat body11 43 of 4 0.39Down
Ovary2 00 of 4 0.10Down
Testis30 24 of 4 1.10None
Male accessory glands13 21 of 4 0.50None
Virgin spermatheca10 23 of 4 0.39Down
Mated spermatheca11 14 of 4 0.41Down
Adult carcass24 04 of 4 0.90None
Larval CNS335 234 of 412.04Up
Larval Salivary gland40 44 of 4 1.46None
Larval midgut8 13 of 4 0.30Down
Larval tubule43 14 of 4 1.60Up
Larval hindgut52 24 of 4 1.89Up
Larval fat body7 21 of 4 0.30Down
Larval trachea503 244 of 418.06Up
Larval carcass224 144 of 4 8.07Up
S2 cells (growing)8 04 of 4 0.32Down
Whole fly27 54 of 4

Looking for FBgn0001075. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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