FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0001077 through 18771 annotations produced 1 hits

fushi-tarazu (ftz):

Annotation Number : CG2047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001077
Gbrowse : chr3R:2690045-2691950 (+) // 100.0 //
Probeset : 1637677_at
Accessions : protein= NP_477498;, nucleotide= NM_058150;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for FBgn0001077.
Homophila reports that CG2047 is a close match (7e-11) to human gene HLXB9;HOXHB9;SCRA1 (NP_005506), a gene associated with Currarino syndrome, 176450 (3).
BioGrid reports that CG2047 interacts with CG31090 CG7047 CG31534 CG3218 CG4059 CG7958 CG9975 CG2328 CG4059 CG6494 CG9786 .
TRiP has 1 RNAi stocks for FBgn0001077 available for purchase.
VDRC has 1 RNAi stocks for FBgn0001077 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.30	Down
Head	1 ± 0	0 of 4	0.40	None
Eye	1 ± 0	0 of 4	0.41	Down
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.20	Down
Salivary gland	0 ± 0	0 of 4	0.20	Down
Crop	1 ± 0	0 of 4	0.40	Down
Midgut	1 ± 0	0 of 4	0.30	Down
Tubule	0 ± 0	0 of 4	0.20	Down
Hindgut	0 ± 0	0 of 4	0.20	Down
Heart	2 ± 1	0 of 4	0.59	None
Fat body	0 ± 0	0 of 4	0.17	Down
Ovary	0 ± 0	0 of 4	0.20	Down
Testis	25 ± 3	4 of 4	5.60	Up
Male accessory glands	0 ± 0	0 of 4	0.20	Down
Virgin spermatheca	0 ± 0	0 of 4	0.14	Down
Mated spermatheca	1 ± 0	0 of 4	0.26	Down
Adult carcass	1 ± 0	0 of 4	0.20	Down
Larval CNS	2 ± 2	0 of 4	0.56	None
Larval Salivary gland	2 ± 0	0 of 4	0.51	None
Larval midgut	0 ± 0	0 of 4	0.17	Down
Larval tubule	0 ± 0	0 of 4	0.10	Down
Larval hindgut	0 ± 0	0 of 4	0.16	Down
Larval fat body	5 ± 2	0 of 4	1.20	None
Larval trachea	0 ± 0	0 of 4	0.13	Down
Larval carcass	0 ± 0	0 of 4	0.18	Down
S2 cells (growing)	0 ± 0	0 of 4	0.12	Down
Whole fly	4 ± 0	0 of 4

Looking for FBgn0001077. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720