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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001078 through 18771 annotations produced 2 hits



Ftz interacting protein 1 (ftz-f1):

Annotation Number : CG4059
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001078
Gbrowse : chr3L:18745013-18791831 (-) // 100.0 //
Probeset : 1624520_a_at
Accessions : protein= NP_524143; /// NP_730359;, nucleotide= NM_079419; /// NM_168775;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0007365 // periodic partitioning // inferred from mutant phenotype
FlyMine data for FBgn0001078.
Homophila reports that CG4059 is a close match (8e-17) to human gene ESCS;NR2E3;PNR (NP_057430), a gene associated with Enhanced S-cone syndrome, 268100 (3);Retinitis pigmentosa-37, 611131 (3).
BioGrid reports that CG4059 interacts with CG4918 CG5067 CG5431 CG5823 CG5893 CG7808 CG7992 CG8280 CG8495 CG11491 CG18389 CG9375 CG5206 CG18085 .
TRiP has 2 RNAi stocks for FBgn0001078 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001078 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 54 of 4 1.30None
Head39 54 of 4 0.30Down
Eye34 74 of 4 0.28Down
Thoracicoabdominal ganglion75 44 of 4 0.60Down
Salivary gland26 14 of 4 0.22Down
Crop32 34 of 4 0.30Down
Midgut41 44 of 4 0.30Down
Tubule33 14 of 4 0.30Down
Hindgut44 44 of 4 0.40Down
Heart36 24 of 4 0.30Down
Fat body41 104 of 4 0.34Down
Ovary544 84 of 4 4.50Up
Testis11 04 of 4 0.10Down
Male accessory glands38 24 of 4 0.30Down
Virgin spermatheca24 34 of 4 0.20Down
Mated spermatheca24 04 of 4 0.20Down
Adult carcass31 14 of 4 0.30Down
Larval CNS49 44 of 4 0.41Down
Larval Salivary gland25 14 of 4 0.21Down
Larval midgut16 14 of 4 0.13Down
Larval tubule9 23 of 4 0.10Down
Larval hindgut24 34 of 4 0.20Down
Larval fat body8 13 of 4 0.10Down
Larval trachea46 44 of 4 0.38Down
Larval carcass24 24 of 4 0.20Down
S2 cells (growing)114 44 of 4 0.94None
Whole fly122 64 of 4



():

Annotation Number : LD11885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001078
Gbrowse : chr3L:18793741-18794395 (-) // 99.24 //
Probeset : 1640821_at
Accessions : protein= , nucleotide=
Pathway : DNA-dependent // inferred from electronic annotation /// 0007365 // periodic partitioning // inferred from mutant pheno
Interpro : heterochronic // traceable author statement /// 0042048 // olfactory behavior // inferred from mutant phenotype /// 004
FlyMine data for FBgn0001078.
TRiP has 2 RNAi stocks for FBgn0001078 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001078 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain339 224 of 4 7.00Up
Head37 104 of 4 0.80None
Eye143 284 of 4 2.95Up
Thoracicoabdominal ganglion177 154 of 4 3.60Up
Salivary gland32 82 of 4 0.66None
Crop59 54 of 4 1.20None
Midgut67 34 of 4 1.40None
Tubule200 144 of 4 4.10Up
Hindgut107 204 of 4 2.20None
Heart92 54 of 4 1.89Up
Fat body30 113 of 4 0.63None
Ovary135 14 of 4 2.80Up
Testis18 24 of 4 0.40Down
Male accessory glands82 164 of 4 1.70None
Virgin spermatheca185 144 of 4 3.81Up
Mated spermatheca176 114 of 4 3.62Up
Adult carcass45 143 of 4 0.90None
Larval CNS29 94 of 4 0.60None
Larval Salivary gland23 21 of 4 0.49None
Larval midgut15 11 of 4 0.32Down
Larval tubule17 14 of 4 0.40Down
Larval hindgut20 54 of 4 0.41Down
Larval fat body7 10 of 4 0.20Down
Larval trachea117 224 of 4 2.41Up
Larval carcass13 21 of 4 0.27Down
S2 cells (growing)34 54 of 4 0.71None
Whole fly48 94 of 4

Looking for FBgn0001078. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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