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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001083 through 18771 annotations produced 1 hits



wrinkled (fw):

Annotation Number : CG1500
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001083
Gbrowse : chrX:11886947-11897943 (-) // 100.0 //
Probeset : 1630231_at
Accessions : protein= NP_001096961; /// NP_511136;, nucleotide= NM_001103491; /// NM_078581;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annot
FlyMine data for FBgn0001083.
BDGP gene expression has embryonic in situ data for fw: 6 pix of staining in 1 body parts.
Homophila reports that CG1500 is a close match (3e-11) to human gene CSPG2;ERVR;WGN;WGN1 (NP_004376), a gene associated with Wagner syndrome 1, 143200 (3).
TRiP has 2 RNAi stocks for FBgn0001083 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001083 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 12 of 4 0.50None
Head55 24 of 4 3.60Up
Eye187 164 of 412.05Up
Thoracicoabdominal ganglion10 20 of 4 0.70None
Salivary gland19 22 of 4 1.22None
Crop33 24 of 4 2.10Up
Midgut6 20 of 4 0.40Down
Tubule11 01 of 4 0.70Down
Hindgut19 14 of 4 1.30None
Heart10 23 of 4 0.64None
Fat body27 94 of 4 1.79None
Ovary1 00 of 4 0.10Down
Testis2 10 of 4 0.20Down
Male accessory glands5 10 of 4 0.40Down
Virgin spermatheca38 44 of 4 2.47Up
Mated spermatheca50 153 of 4 3.27None
Adult carcass44 64 of 4 2.80Up
Larval CNS68 84 of 4 4.41Up
Larval Salivary gland21 33 of 4 1.41None
Larval midgut7 11 of 4 0.47Down
Larval tubule7 12 of 4 0.50Down
Larval hindgut461 324 of 429.69Up
Larval fat body5 11 of 4 0.40Down
Larval trachea453 624 of 429.19Up
Larval carcass623 354 of 440.12Up
S2 cells (growing)2 10 of 4 0.16Down
Whole fly15 14 of 4

Looking for FBgn0001083. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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