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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001085 through 18771 annotations produced 2 hits



frizzled (fz):

Annotation Number : CG17697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001085
Gbrowse : chr3L:14267474-14361748 (+) // 100.0 //
Probeset : 1631231_at
Accessions : protein= NP_524812; /// NP_729970;, nucleotide= NM_080073; /// NM_168587;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035317 // imaginal disc-derived wing hair organization // i
Interpro : 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 00058
FlyMine data for FBgn0001085.
Homophila reports that CG17697 is a close match (1e-11) to human gene MFRP (NP_113621), a gene associated with Microphthalmia, posterior, with retinitis pigmentosa, foveoschisis, and optic disc drusen, 611040 (3).
BioGrid reports that CG17697 interacts with CG5272 CG11579 CG11579 CG11579 CG11579 CG5680 CG7595 CG3619 CG17941 CG17941 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG3352 CG3352 CG3352 CG3352 CG13396 CG13396 CG2275 CG3936 CG8416 CG8416 CG8075 CG8075 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG16993 CG16993 CG11614 CG3779 CG11084 CG11084 CG9774 CG2621 CG2621 CG3595 CG11895 CG11895 CG11895 CG11895 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG15792 Dmel CG33956 .
TRiP has 3 RNAi stocks for FBgn0001085 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001085 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain106 ± 114 of 4 2.70Up
Head28 ± 14 of 4 0.70Down
Eye11 ± 23 of 4 0.29Down
Thoracicoabdominal ganglion75 ± 74 of 4 1.90Up
Salivary gland19 ± 22 of 4 0.49Down
Crop94 ± 54 of 4 2.40Up
Midgut23 ± 23 of 4 0.60Down
Tubule8 ± 10 of 4 0.20Down
Hindgut47 ± 24 of 4 1.20None
Heart14 ± 21 of 4 0.37Down
Fat body6 ± 40 of 4 0.16Down
Ovary165 ± 24 of 4 4.20Up
Testis2 ± 00 of 4 0.10Down
Male accessory glands32 ± 14 of 4 0.80None
Virgin spermatheca13 ± 11 of 4 0.34Down
Mated spermatheca15 ± 11 of 4 0.39Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS223 ± 144 of 4 5.70Up
Larval Salivary gland22 ± 54 of 4 0.58Down
Larval midgut18 ± 13 of 4 0.46Down
Larval tubule26 ± 34 of 4 0.70Down
Larval hindgut36 ± 34 of 4 0.92None
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea134 ± 74 of 4 3.43Up
Larval carcass33 ± 34 of 4 0.85None
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly39 ± 34 of 4



frizzled (fz):

Annotation Number : CG17697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001085
Gbrowse : chr3L:14267446-14326904 (+) // 99.65 //
Probeset : 1639883_at
Accessions : protein= NP_524812; /// NP_729970;, nucleotide= NM_080073; /// NM_168587;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035317 // imaginal disc-derived wing hair organization // i
Interpro : 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 00058
FlyMine data for FBgn0001085.
Homophila reports that CG17697 is a close match (1e-11) to human gene MFRP (NP_113621), a gene associated with Microphthalmia, posterior, with retinitis pigmentosa, foveoschisis, and optic disc drusen, 611040 (3).
BioGrid reports that CG17697 interacts with CG5272 CG11579 CG11579 CG11579 CG11579 CG5680 CG7595 CG3619 CG17941 CG17941 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG18361 CG3352 CG3352 CG3352 CG3352 CG13396 CG13396 CG2275 CG3936 CG8416 CG8416 CG8075 CG8075 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG9739 CG16993 CG16993 CG11614 CG3779 CG11084 CG11084 CG9774 CG2621 CG2621 CG3595 CG11895 CG11895 CG11895 CG11895 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG15792 Dmel CG33956 .
TRiP has 3 RNAi stocks for FBgn0001085 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001085 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 ± 24 of 4 6.20Up
Head8 ± 03 of 4 0.90None
Eye7 ± 02 of 4 0.81None
Thoracicoabdominal ganglion37 ± 34 of 4 4.10Up
Salivary gland18 ± 32 of 4 2.02None
Crop44 ± 24 of 4 4.90Up
Midgut19 ± 14 of 4 2.10Up
Tubule15 ± 13 of 4 1.60Up
Hindgut29 ± 24 of 4 3.20Up
Heart8 ± 03 of 4 0.89None
Fat body15 ± 24 of 4 1.66Up
Ovary7 ± 00 of 4 0.80None
Testis19 ± 24 of 4 2.10Up
Male accessory glands16 ± 12 of 4 1.80Up
Virgin spermatheca20 ± 44 of 4 2.22None
Mated spermatheca34 ± 94 of 4 3.79None
Adult carcass7 ± 20 of 4 0.80None
Larval CNS61 ± 124 of 4 6.65Up
Larval Salivary gland10 ± 12 of 4 1.11None
Larval midgut8 ± 11 of 4 0.87None
Larval tubule12 ± 12 of 4 1.40None
Larval hindgut11 ± 03 of 4 1.24None
Larval fat body6 ± 20 of 4 0.70None
Larval trachea36 ± 34 of 4 3.98Up
Larval carcass13 ± 13 of 4 1.52None
S2 cells (growing)4 ± 10 of 4 0.54None
Whole fly9 ± 12 of 4

Looking for FBgn0001085. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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