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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001091 through 18771 annotations produced 1 hits



G3-P dehydrogenase (Gapdh1):

Annotation Number : CG12055
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001091
Gbrowse : chr2R:3679402-3680885 (-) // 100.0 //
Probeset : 1640907_at
Accessions : protein= NP_001033936; /// NP_525108;, nucleotide= NM_001038847; /// NM_080369;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydroge
FlyMine data for FBgn0001091.
BDGP gene expression has embryonic in situ data for Gapdh1: 13 pix of staining in 14 body parts.
BioGrid reports that CG12055 interacts with CG13074 CG15153 CG3923 .
TRiP has 1 RNAi stocks for FBgn0001091 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001091 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1692 414 of 4 0.80Down
Head2264 734 of 4 1.00None
Eye2282 1144 of 4 1.03None
Thoracicoabdominal ganglion2128 484 of 4 1.00None
Salivary gland6857 2624 of 4 3.10Up
Crop3060 1504 of 4 1.40Up
Midgut1051 344 of 4 0.50Down
Tubule2193 504 of 4 1.00None
Hindgut2996 784 of 4 1.40Up
Heart3309 2014 of 4 1.49Up
Fat body3201 4414 of 4 1.45Up
Ovary1673 304 of 4 0.80Down
Testis189 54 of 4 0.10Down
Male accessory glands1046 344 of 4 0.50Down
Virgin spermatheca3359 1094 of 4 1.52Up
Mated spermatheca3158 1704 of 4 1.43Up
Adult carcass4892 3514 of 4 2.20Up
Larval CNS1928 1404 of 4 0.87Down
Larval Salivary gland2743 1204 of 4 1.24Up
Larval midgut1274 274 of 4 0.58Down
Larval tubule2307 1134 of 4 1.00None
Larval hindgut2099 364 of 4 0.95None
Larval fat body4619 3634 of 4 2.10Up
Larval trachea1928 1254 of 4 0.87Down
Larval carcass4431 4174 of 4 2.00Up
S2 cells (growing)1773 274 of 4 0.80Down
Whole fly2214 334 of 4

Looking for FBgn0001091. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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