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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001092 through 18771 annotations produced 2 hits



G3-P dehydrogenase (Gapdh2):

Annotation Number : CG8893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001092
Gbrowse : chrX:15762335-15763662 (+) // 100.0 //
Probeset : 1632667_s_at
Accessions : protein= NP_525091; /// NP_542445;, nucleotide= NM_080352; /// NM_080714;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydroge
FlyMine data for FBgn0001092.
TRiP has 1 RNAi stocks for FBgn0001092 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2357 214 of 4 0.90None
Head2935 264 of 4 1.10Up
Eye3540 1644 of 4 1.35Up
Thoracicoabdominal ganglion2994 804 of 4 1.10Up
Salivary gland5526 1224 of 4 2.10Up
Crop3476 814 of 4 1.30Up
Midgut2715 814 of 4 1.00None
Tubule3841 574 of 4 1.50Up
Hindgut4197 754 of 4 1.60Up
Heart3522 1064 of 4 1.34Up
Fat body3645 4264 of 4 1.39Up
Ovary2916 394 of 4 1.10Up
Testis326 144 of 4 0.10Down
Male accessory glands1252 294 of 4 0.50Down
Virgin spermatheca4330 1154 of 4 1.65Up
Mated spermatheca4100 2164 of 4 1.56Up
Adult carcass3681 2554 of 4 1.40Up
Larval CNS2613 2094 of 4 0.99None
Larval Salivary gland2617 914 of 4 1.00None
Larval midgut3266 1734 of 4 1.24Up
Larval tubule2749 614 of 4 1.00None
Larval hindgut3024 714 of 4 1.15Up
Larval fat body3676 3724 of 4 1.40None
Larval trachea3435 1894 of 4 1.31Up
Larval carcass5351 4634 of 4 2.04Up
S2 cells (growing)2123 354 of 4 0.81Down
Whole fly2626 474 of 4



G3-P dehydrogenase (Gapdh2):

Annotation Number : CG8893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001092
Gbrowse : chrX:15762222-15763695 (+) // 100.0 //
Probeset : 1627915_a_at
Accessions : protein= NP_525091; /// NP_542445;, nucleotide= NM_080352; /// NM_080714;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydroge
FlyMine data for FBgn0001092.
TRiP has 1 RNAi stocks for FBgn0001092 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2934 1174 of 4 0.80None
Head3844 2484 of 4 1.10None
Eye2407 1144 of 4 0.70Down
Thoracicoabdominal ganglion3822 754 of 4 1.10None
Salivary gland8817 5344 of 4 2.55Up
Crop5059 2144 of 4 1.50Up
Midgut4269 1154 of 4 1.20None
Tubule5294 1574 of 4 1.50Up
Hindgut5090 1164 of 4 1.50Up
Heart3671 4894 of 4 1.06None
Fat body5296 5814 of 4 1.53Up
Ovary3441 794 of 4 1.00None
Testis691 84 of 4 0.20Down
Male accessory glands2848 924 of 4 0.80None
Virgin spermatheca6281 1604 of 4 1.82Up
Mated spermatheca5991 2254 of 4 1.73Up
Adult carcass5103 2464 of 4 1.50Up
Larval CNS2689 1294 of 4 0.78None
Larval Salivary gland4938 674 of 4 1.43Up
Larval midgut4963 1374 of 4 1.43Up
Larval tubule4048 184 of 4 1.20None
Larval hindgut4000 394 of 4 1.16None
Larval fat body5698 5604 of 4 1.60Up
Larval trachea2731 1274 of 4 0.79None
Larval carcass5770 5384 of 4 1.67Up
S2 cells (growing)2257 714 of 4 0.65Down
Whole fly3460 2864 of 4

Looking for FBgn0001092. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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