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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001099 through 18771 annotations produced 1 hits



gonadal /// gdl-ORF39 (gdl /// gdl-ORF39):

Annotation Number : CG33088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001099 /// FBgn0028377
Gbrowse : chr3L:15502544-15503848 (+) // 100.0 //
Probeset : 1631069_a_at
Accessions : protein= NP_001027126; /// NP_001027127;, nucleotide= NM_001031955; /// NM_001031956;
FlyMine data for FBgn0001099 /// FBgn0028377.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 34 of 4 0.30Down
Head45 24 of 4 0.20Down
Eye62 64 of 4 0.27Down
Thoracicoabdominal ganglion70 34 of 4 0.30Down
Salivary gland58 54 of 4 0.25Down
Crop52 34 of 4 0.20Down
Midgut31 22 of 4 0.10Down
Tubule45 23 of 4 0.20Down
Hindgut30 34 of 4 0.10Down
Heart30 04 of 4 0.13Down
Fat body43 94 of 4 0.18Down
Ovary175 14 of 4 0.70None
Testis1667 514 of 4 7.10Up
Male accessory glands51 54 of 4 0.20Down
Virgin spermatheca55 54 of 4 0.23Down
Mated spermatheca63 44 of 4 0.27Down
Adult carcass45 33 of 4 0.20Down
Larval CNS56 54 of 4 0.24Down
Larval Salivary gland36 34 of 4 0.15Down
Larval midgut23 12 of 4 0.10Down
Larval tubule45 14 of 4 0.20Down
Larval hindgut32 34 of 4 0.14Down
Larval fat body243 1114 of 4 1.00None
Larval trachea46 134 of 4 0.20Down
Larval carcass26 14 of 4 0.11Down
S2 cells (growing)34 24 of 4 0.15Down
Whole fly235 214 of 4

Looking for FBgn0001099. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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