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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001104 through 18771 annotations produced 1 hits



G protein alpha o subunit 65A (G-ialpha65A):

Annotation Number : CG10060
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001104
Gbrowse : chr3L:6965843-6973153 (-) // 100.0 //
Probeset : 1627491_at
Accessions : protein= NP_477502;, nucleotide= NM_058154;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity /// 0005834 // heterotrim
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0001104.
BDGP gene expression has embryonic in situ data for G-ialpha65A: 10 pix of staining in 6 body parts.
Homophila reports that CG10060 is a close match (2e-65) to human gene AHO;GNAS;GNAS1;GPSA;PHP1A;PHP1B;POH (NP_001070956), a gene associated with Acromegaly, 102200 (3);McCune-Albright syndrome, 174800 (3);Osseous heteroplasia, progressive, 166350 (3);Pituitary ACTH secreting adenoma (3);Prolonged bleeding time, brachydac;Pseudohypoparathyroidism, type Ia, 103580 (3);Pseudohypoparathyroidism, type Ib, 603233 (3);Somatotrophinoma (3).
BioGrid reports that CG10060 interacts with CG11327 CG5546 CG11312 CG5692 .
TRiP has 4 RNAi stocks for FBgn0001104 available for purchase.
VDRC has 1 RNAi stocks for FBgn0001104 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain221 ± 84 of 4 0.50Down
Head251 ± 84 of 4 0.60Down
Eye215 ± 44 of 4 0.49Down
Thoracicoabdominal ganglion333 ± 144 of 4 0.80Down
Salivary gland358 ± 374 of 4 0.81None
Crop366 ± 114 of 4 0.80None
Midgut460 ± 54 of 4 1.00None
Tubule204 ± 84 of 4 0.50Down
Hindgut219 ± 74 of 4 0.50Down
Heart169 ± 164 of 4 0.38Down
Fat body232 ± 164 of 4 0.52Down
Ovary1092 ± 144 of 4 2.50Up
Testis64 ± 44 of 4 0.10Down
Male accessory glands67 ± 54 of 4 0.20Down
Virgin spermatheca361 ± 74 of 4 0.81None
Mated spermatheca354 ± 164 of 4 0.80None
Adult carcass156 ± 104 of 4 0.40Down
Larval CNS706 ± 604 of 4 1.59Up
Larval Salivary gland278 ± 74 of 4 0.63Down
Larval midgut438 ± 154 of 4 0.99None
Larval tubule271 ± 24 of 4 0.60Down
Larval hindgut390 ± 114 of 4 0.88None
Larval fat body133 ± 294 of 4 0.30Down
Larval trachea508 ± 294 of 4 1.14None
Larval carcass283 ± 284 of 4 0.64Down
S2 cells (growing)1161 ± 114 of 4 2.61Up
Whole fly444 ± 344 of 4

Looking for FBgn0001104. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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