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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001105 through 18771 annotations produced 1 hits



G-protein beta 13F (Gbeta13F):

Annotation Number : CG10545
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001105
Gbrowse : chrX:15754166-15756919 (+) // 100.0 //
Probeset : 1627398_a_at
Accessions : protein= NP_525090; /// NP_727907; /// NP_996459; /// NP_996460; /// NP_996461; /// NP_996462;, nucleotide= NM_080351; /// NM_167469; /// NM_206736; /// NM_206737; /// NM_206738; /// NM_206739;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity /// 0005834 // heterotrim
Interpro : 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // non-trac
FlyMine data for FBgn0001105.
BDGP gene expression has embryonic in situ data for Gbeta13F: 11 pix of staining in 14 body parts.
Homophila reports that CG10545 is a close match (1e-17) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
BioGrid reports that CG10545 interacts with CG3085 CG3647 CG7173 CG5055 .
TRiP has 2 RNAi stocks for FBgn0001105 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001105 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1502 ± 244 of 4 2.50Up
Head635 ± 214 of 4 1.10None
Eye1289 ± 614 of 4 2.15Up
Thoracicoabdominal ganglion1568 ± 484 of 4 2.60Up
Salivary gland672 ± 464 of 4 1.12None
Crop869 ± 124 of 4 1.40Up
Midgut443 ± 144 of 4 0.70Down
Tubule475 ± 64 of 4 0.80Down
Hindgut751 ± 84 of 4 1.30Up
Heart1364 ± 744 of 4 2.27Up
Fat body447 ± 424 of 4 0.74Down
Ovary858 ± 84 of 4 1.40Up
Testis347 ± 84 of 4 0.60Down
Male accessory glands547 ± 164 of 4 0.90Down
Virgin spermatheca587 ± 244 of 4 0.98None
Mated spermatheca522 ± 114 of 4 0.87Down
Adult carcass554 ± 214 of 4 0.90None
Larval CNS1522 ± 644 of 4 2.54Up
Larval Salivary gland565 ± 264 of 4 0.94None
Larval midgut638 ± 214 of 4 1.06None
Larval tubule1079 ± 304 of 4 1.80Up
Larval hindgut902 ± 94 of 4 1.50Up
Larval fat body789 ± 464 of 4 1.30Up
Larval trachea1349 ± 644 of 4 2.25Up
Larval carcass798 ± 164 of 4 1.33Up
S2 cells (growing)942 ± 84 of 4 1.57Up
Whole fly600 ± 134 of 4

Looking for FBgn0001105. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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