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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001114 through 18771 annotations produced 1 hits



glutactin (Glt):

Annotation Number : CG9280
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001114
Gbrowse : chr2L:8672042-8676811 (+) // 100.0 //
Probeset : 1630515_s_at
Accessions : protein= NP_477504; /// NP_723408; /// NP_723409;, nucleotide= NM_058156; /// NM_164831; /// NM_164832;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix
Interpro : 0005509 // calcium ion binding // non-traceable author statement
FlyMine data for FBgn0001114.
BDGP gene expression has embryonic in situ data for Glt: 15 pix of staining in 3 body parts.
Homophila reports that CG9280 is a close match (3e-13) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
VDRC has 3 RNAi stocks for FBgn0001114 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 54 of 4 0.30Down
Head1439 1414 of 4 4.90Up
Eye874 1534 of 4 2.95Up
Thoracicoabdominal ganglion69 64 of 4 0.20Down
Salivary gland11 41 of 4 0.04Down
Crop24 24 of 4 0.10Down
Midgut2 10 of 4 0.00Down
Tubule25 62 of 4 0.10Down
Hindgut62 14 of 4 0.20Down
Heart1480 224 of 4 5.00Up
Fat body2802 3224 of 4 9.46Up
Ovary2 10 of 4 0.00Down
Testis18 14 of 4 0.10Down
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca2388 654 of 4 8.06Up
Mated spermatheca2058 564 of 4 6.95Up
Adult carcass1581 954 of 4 5.30Up
Larval CNS8 14 of 4 0.03Down
Larval Salivary gland81 84 of 4 0.27Down
Larval midgut12 12 of 4 0.04Down
Larval tubule22 24 of 4 0.10Down
Larval hindgut106 144 of 4 0.36Down
Larval fat body2694 2464 of 4 9.10Up
Larval trachea226 214 of 4 0.77Down
Larval carcass400 354 of 4 1.35None
S2 cells (growing)1014 364 of 4 3.43Up
Whole fly296 84 of 4

Looking for FBgn0001114. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime