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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0001120 through 18771 annotations produced 1 hits


giant nuclei (gnu):

Annotation Number : CG5272
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001120
Gbrowse : chr3L:14795479-14796457 (-) // 100.0 //
Probeset : 1633417_at
Accessions : protein= NP_648726;, nucleotide= NM_140469;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0001120.
BioGrid reports that CG5272 interacts with CG5383 CG5846 CG7196 CG8506 CG8529 CG9192 CG9331 CG9392 CG9653 CG3510 CG11420 CG9183 .
VDRC has 2 RNAi stocks for FBgn0001120 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.00Down
Head9 ± 10 of 4 0.00Down
Eye7 ± 22 of 4 0.01Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland15 ± 31 of 4 0.02Down
Crop8 ± 20 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule27 ± 231 of 4 0.00Down
Hindgut7 ± 11 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body16 ± 82 of 4 0.02Down
Ovary1245 ± 164 of 4 1.80Up
Testis9 ± 04 of 4 0.00Down
Male accessory glands12 ± 20 of 4 0.00Down
Virgin spermatheca20 ± 33 of 4 0.03Down
Mated spermatheca10 ± 42 of 4 0.01Down
Adult carcass31 ± 93 of 4 0.00Down
Larval CNS4 ± 21 of 4 0.01Down
Larval Salivary gland5 ± 11 of 4 0.01Down
Larval midgut11 ± 40 of 4 0.02Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut6 ± 22 of 4 0.01Down
Larval fat body8 ± 21 of 4 0.00Down
Larval trachea3 ± 20 of 4 0.01Down
Larval carcass8 ± 20 of 4 0.01Down
S2 cells (growing)7 ± 03 of 4 0.01Down
Whole fly682 ± 514 of 4

Looking for FBgn0001120. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime