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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001124 through 18771 annotations produced 1 hits



Glutamate oxaloacetate transaminase 1 (Got1):

Annotation Number : CG8430
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001124
Gbrowse : chr2R:12025856-12029439 (+) // 100.0 //
Probeset : 1631817_a_at
Accessions : protein= NP_611086; /// NP_725534;, nucleotide= NM_137242; /// NM_166148;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004069 // L-aspartate:2-oxoglutarate aminotra
FlyMine data for FBgn0001124.
TRiP has 1 RNAi stocks for FBgn0001124 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001124 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1361 334 of 4 1.90Up
Head1361 254 of 4 1.90Up
Eye1575 344 of 4 2.18Up
Thoracicoabdominal ganglion1534 564 of 4 2.10Up
Salivary gland1987 294 of 4 2.75Up
Crop1993 354 of 4 2.80Up
Midgut1591 664 of 4 2.20Up
Tubule2533 1044 of 4 3.50Up
Hindgut2638 214 of 4 3.60Up
Heart1760 534 of 4 2.44Up
Fat body1180 1294 of 4 1.63Up
Ovary512 114 of 4 0.70Down
Testis1181 424 of 4 1.60Up
Male accessory glands431 324 of 4 0.60Down
Virgin spermatheca2619 724 of 4 3.62Up
Mated spermatheca1382 994 of 4 1.91Up
Adult carcass1104 444 of 4 1.50Up
Larval CNS624 924 of 4 0.86None
Larval Salivary gland541 34 of 4 0.75None
Larval midgut2634 1104 of 4 3.65Up
Larval tubule2164 524 of 4 3.00Up
Larval hindgut1337 394 of 4 1.85Up
Larval fat body371 174 of 4 0.50Down
Larval trachea604 384 of 4 0.84None
Larval carcass1740 2164 of 4 2.41Up
S2 cells (growing)731 124 of 4 1.01None
Whole fly722 664 of 4

Looking for FBgn0001124. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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