Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001125 through 18771 annotations produced 1 hits



Glutamate oxaloacetate transaminase 2 (Got2):

Annotation Number : CG4233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001125
Gbrowse : chr2L:1984511-1987767 (-) // 100.0 //
Probeset : 1629055_a_at
Accessions : protein= NP_608636; /// NP_722744; /// NP_722745;, nucleotide= NM_134792; /// NM_164445; /// NM_164446;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // infer
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004069 // L-aspartate:2-oxoglutarate aminotra
FlyMine data for FBgn0001125.
BioGrid reports that CG4233 interacts with CG4998 CG8640 CG8884 .
VDRC has 3 RNAi stocks for FBgn0001125 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain974 244 of 4 0.60Down
Head2096 1294 of 4 1.30Up
Eye1907 944 of 4 1.21Up
Thoracicoabdominal ganglion1177 214 of 4 0.70Down
Salivary gland4052 674 of 4 2.56Up
Crop1844 484 of 4 1.20Up
Midgut1413 674 of 4 0.90None
Tubule2965 804 of 4 1.90Up
Hindgut1691 164 of 4 1.10None
Heart3510 2134 of 4 2.22Up
Fat body3255 4944 of 4 2.06Up
Ovary1470 184 of 4 0.90None
Testis875 94 of 4 0.60Down
Male accessory glands957 84 of 4 0.60Down
Virgin spermatheca4141 1464 of 4 2.62Up
Mated spermatheca2505 1554 of 4 1.58Up
Adult carcass2623 594 of 4 1.70Up
Larval CNS604 614 of 4 0.38Down
Larval Salivary gland2226 1134 of 4 1.41Up
Larval midgut1507 684 of 4 0.95None
Larval tubule820 644 of 4 0.50Down
Larval hindgut928 334 of 4 0.59Down
Larval fat body1825 1964 of 4 1.20None
Larval trachea1733 874 of 4 1.10None
Larval carcass2755 2194 of 4 1.74Up
S2 cells (growing)870 174 of 4 0.55Down
Whole fly1582 804 of 4

Looking for FBgn0001125. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime