FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0001125 through 18771 annotations produced 1 hits

Glutamate oxaloacetate transaminase 2 (Got2):

Annotation Number : CG4233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001125
Gbrowse : chr2L:1984511-1987767 (-) // 100.0 //
Probeset : 1629055_a_at
Accessions : protein= NP_608636; /// NP_722744; /// NP_722745;, nucleotide= NM_134792; /// NM_164445; /// NM_164446;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // infer
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004069 // L-aspartate:2-oxoglutarate aminotra
FlyMine data for FBgn0001125.
BioGrid reports that CG4233 interacts with CG4998 CG8640 CG8884 .
VDRC has 3 RNAi stocks for FBgn0001125 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	974 ± 24	4 of 4	0.60	Down
Head	2096 ± 129	4 of 4	1.30	Up
Eye	1907 ± 94	4 of 4	1.21	Up
Thoracicoabdominal ganglion	1177 ± 21	4 of 4	0.70	Down
Salivary gland	4052 ± 67	4 of 4	2.56	Up
Crop	1844 ± 48	4 of 4	1.20	Up
Midgut	1413 ± 67	4 of 4	0.90	None
Tubule	2965 ± 80	4 of 4	1.90	Up
Hindgut	1691 ± 16	4 of 4	1.10	None
Heart	3510 ± 213	4 of 4	2.22	Up
Fat body	3255 ± 494	4 of 4	2.06	Up
Ovary	1470 ± 18	4 of 4	0.90	None
Testis	875 ± 9	4 of 4	0.60	Down
Male accessory glands	957 ± 8	4 of 4	0.60	Down
Virgin spermatheca	4141 ± 146	4 of 4	2.62	Up
Mated spermatheca	2505 ± 155	4 of 4	1.58	Up
Adult carcass	2623 ± 59	4 of 4	1.70	Up
Larval CNS	604 ± 61	4 of 4	0.38	Down
Larval Salivary gland	2226 ± 113	4 of 4	1.41	Up
Larval midgut	1507 ± 68	4 of 4	0.95	None
Larval tubule	820 ± 64	4 of 4	0.50	Down
Larval hindgut	928 ± 33	4 of 4	0.59	Down
Larval fat body	1825 ± 196	4 of 4	1.20	None
Larval trachea	1733 ± 87	4 of 4	1.10	None
Larval carcass	2755 ± 219	4 of 4	1.74	Up
S2 cells (growing)	870 ± 17	4 of 4	0.55	Down
Whole fly	1582 ± 80	4 of 4

Looking for FBgn0001125. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720