FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0001128 through 18771 annotations produced 4 hits

5' gene (Gpdh):

Annotation Number : CG9042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001128
Gbrowse : chr2L:5943681-5947625 (+) // 100.0 //
Probeset : 1636311_at
Accessions : protein= NP_476565; /// NP_476566; /// NP_476567;, nucleotide= NM_057217; /// NM_057218; /// NM_057219;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004367 // glycerol-3-phosphate dehydrogenase
FlyMine data for FBgn0001128.
Homophila reports that CG9042 is a close match (6e-115) to human gene GPD1L;KIAA0089 (NP_055956), a gene associated with Brugada syndrome 2, 611777 (3).
BioGrid reports that CG9042 interacts with CG9610 .
VDRC has 3 RNAi stocks for FBgn0001128 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	88 ± 3	4 of 4	0.10	Down
Head	1555 ± 35	4 of 4	1.80	Up
Eye	359 ± 78	4 of 4	0.42	Down
Thoracicoabdominal ganglion	88 ± 14	4 of 4	0.10	Down
Salivary gland	3790 ± 101	4 of 4	4.47	Up
Crop	586 ± 37	4 of 4	0.70	None
Midgut	1267 ± 63	4 of 4	1.50	Up
Tubule	3752 ± 116	4 of 4	4.40	Up
Hindgut	484 ± 14	4 of 4	0.60	Down
Heart	1809 ± 33	4 of 4	2.13	Up
Fat body	3484 ± 252	4 of 4	4.11	Up
Ovary	40 ± 1	4 of 4	0.00	Down
Testis	18 ± 2	4 of 4	0.00	Down
Male accessory glands	601 ± 37	4 of 4	0.70	None
Virgin spermatheca	4601 ± 196	4 of 4	5.42	Up
Mated spermatheca	4896 ± 207	4 of 4	5.77	Up
Adult carcass	2262 ± 82	4 of 4	2.70	Up
Larval CNS	90 ± 19	4 of 4	0.11	Down
Larval Salivary gland	652 ± 48	4 of 4	0.77	None
Larval midgut	882 ± 80	4 of 4	1.04	None
Larval tubule	1911 ± 22	4 of 4	2.30	Up
Larval hindgut	437 ± 30	4 of 4	0.52	Down
Larval fat body	400 ± 57	4 of 4	0.50	Down
Larval trachea	131 ± 48	4 of 4	0.15	Down
Larval carcass	303 ± 48	4 of 4	0.36	Down
S2 cells (growing)	226 ± 3	4 of 4	0.27	Down
Whole fly	848 ± 104	4 of 4

5' gene (Gpdh):

Annotation Number : CG9042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001128
Gbrowse : chr2L:5943681-5949092 (+) // 100.0 //
Probeset : 1634893_at
Accessions : protein= NP_476565; /// NP_476566; /// NP_476567;, nucleotide= NM_057217; /// NM_057218; /// NM_057219;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004367 // glycerol-3-phosphate dehydrogenase
FlyMine data for FBgn0001128.
Homophila reports that CG9042 is a close match (6e-115) to human gene GPD1L;KIAA0089 (NP_055956), a gene associated with Brugada syndrome 2, 611777 (3).
BioGrid reports that CG9042 interacts with CG9610 .
VDRC has 3 RNAi stocks for FBgn0001128 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1403 ± 149	4 of 4	1.80	Up
Head	973 ± 63	4 of 4	1.20	None
Eye	299 ± 10	4 of 4	0.38	Down
Thoracicoabdominal ganglion	1574 ± 55	4 of 4	2.00	Up
Salivary gland	473 ± 34	4 of 4	0.60	Down
Crop	448 ± 43	4 of 4	0.60	Down
Midgut	374 ± 25	4 of 4	0.50	Down
Tubule	3047 ± 432	4 of 4	3.90	Up
Hindgut	727 ± 14	4 of 4	0.90	None
Heart	399 ± 77	4 of 4	0.50	Down
Fat body	642 ± 171	4 of 4	0.81	None
Ovary	7 ± 1	2 of 4	0.00	Down
Testis	58 ± 5	4 of 4	0.10	Down
Male accessory glands	410 ± 46	4 of 4	0.50	Down
Virgin spermatheca	892 ± 124	4 of 4	1.13	None
Mated spermatheca	453 ± 44	4 of 4	0.57	Down
Adult carcass	1760 ± 142	4 of 4	2.20	Up
Larval CNS	83 ± 10	4 of 4	0.11	Down
Larval Salivary gland	26 ± 3	4 of 4	0.03	Down
Larval midgut	42 ± 2	4 of 4	0.05	Down
Larval tubule	82 ± 11	4 of 4	0.10	Down
Larval hindgut	39 ± 6	4 of 4	0.05	Down
Larval fat body	30 ± 1	4 of 4	0.00	Down
Larval trachea	16 ± 3	4 of 4	0.02	Down
Larval carcass	108 ± 17	4 of 4	0.14	Down
S2 cells (growing)	37 ± 3	4 of 4	0.05	Down
Whole fly	791 ± 99	4 of 4

5' gene (Gpdh):

Annotation Number : CG9042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001128
Gbrowse : chr2L:5943681-5948313 (+) // 100.0 //
Probeset : 1616608_a_at
Accessions : protein= NP_476565; /// NP_476566; /// NP_476567;, nucleotide= NM_057217; /// NM_057218; /// NM_057219;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004367 // glycerol-3-phosphate dehydrogenase
FlyMine data for FBgn0001128.
Homophila reports that CG9042 is a close match (6e-115) to human gene GPD1L;KIAA0089 (NP_055956), a gene associated with Brugada syndrome 2, 611777 (3).
BioGrid reports that CG9042 interacts with CG9610 .
VDRC has 3 RNAi stocks for FBgn0001128 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1016 ± 23	4 of 4	0.70	Down
Head	1874 ± 85	4 of 4	1.30	Up
Eye	282 ± 47	4 of 4	0.19	Down
Thoracicoabdominal ganglion	876 ± 14	4 of 4	0.60	Down
Salivary gland	3642 ± 263	4 of 4	2.50	Up
Crop	994 ± 5	4 of 4	0.70	Down
Midgut	1170 ± 40	4 of 4	0.80	None
Tubule	3202 ± 216	4 of 4	2.20	Up
Hindgut	1053 ± 35	4 of 4	0.70	Down
Heart	834 ± 113	4 of 4	0.57	Down
Fat body	3597 ± 430	4 of 4	2.47	Up
Ovary	848 ± 26	4 of 4	0.60	Down
Testis	124 ± 5	4 of 4	0.10	Down
Male accessory glands	1036 ± 51	4 of 4	0.70	Down
Virgin spermatheca	3039 ± 174	4 of 4	2.08	Up
Mated spermatheca	3333 ± 167	4 of 4	2.29	Up
Adult carcass	2438 ± 218	4 of 4	1.70	Up
Larval CNS	170 ± 9	4 of 4	0.12	Down
Larval Salivary gland	861 ± 52	4 of 4	0.59	Down
Larval midgut	521 ± 52	4 of 4	0.36	Down
Larval tubule	1505 ± 61	4 of 4	1.00	None
Larval hindgut	643 ± 60	4 of 4	0.44	Down
Larval fat body	623 ± 59	4 of 4	0.40	Down
Larval trachea	147 ± 26	4 of 4	0.10	Down
Larval carcass	1132 ± 147	4 of 4	0.78	None
S2 cells (growing)	408 ± 7	4 of 4	0.28	Down
Whole fly	1458 ± 127	4 of 4

5' gene (Gpdh):

Annotation Number : CG9042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001128
Gbrowse : chr2L:5943681-5948313 (+) // 100.0 //
Probeset : 1625949_at
Accessions : protein= NP_476565; /// NP_476566; /// NP_476567;, nucleotide= NM_057217; /// NM_057218; /// NM_057219;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004367 // glycerol-3-phosphate dehydrogenase
FlyMine data for FBgn0001128.
Homophila reports that CG9042 is a close match (6e-115) to human gene GPD1L;KIAA0089 (NP_055956), a gene associated with Brugada syndrome 2, 611777 (3).
BioGrid reports that CG9042 interacts with CG9610 .
VDRC has 3 RNAi stocks for FBgn0001128 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	95 ± 5	4 of 4	0.20	Down
Head	246 ± 23	4 of 4	0.50	Down
Eye	74 ± 5	4 of 4	0.14	Down
Thoracicoabdominal ganglion	71 ± 2	4 of 4	0.10	Down
Salivary gland	1564 ± 141	4 of 4	2.90	Up
Crop	665 ± 19	4 of 4	1.20	Up
Midgut	811 ± 28	4 of 4	1.50	Up
Tubule	209 ± 13	4 of 4	0.40	Down
Hindgut	336 ± 1	4 of 4	0.60	Down
Heart	241 ± 22	4 of 4	0.45	Down
Fat body	421 ± 108	4 of 4	0.78	None
Ovary	949 ± 20	4 of 4	1.80	Up
Testis	84 ± 1	4 of 4	0.20	Down
Male accessory glands	664 ± 18	4 of 4	1.20	Up
Virgin spermatheca	965 ± 67	4 of 4	1.79	Up
Mated spermatheca	1107 ± 92	4 of 4	2.05	Up
Adult carcass	345 ± 13	4 of 4	0.60	Down
Larval CNS	170 ± 7	4 of 4	0.32	Down
Larval Salivary gland	653 ± 38	4 of 4	1.21	None
Larval midgut	861 ± 38	4 of 4	1.60	Up
Larval tubule	190 ± 7	4 of 4	0.40	Down
Larval hindgut	474 ± 28	4 of 4	0.88	None
Larval fat body	550 ± 49	4 of 4	1.00	None
Larval trachea	251 ± 15	4 of 4	0.47	Down
Larval carcass	1411 ± 183	4 of 4	2.62	Up
S2 cells (growing)	243 ± 3	4 of 4	0.45	Down
Whole fly	539 ± 36	4 of 4

Looking for FBgn0001128. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720