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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001134 through 18771 annotations produced 1 hits



GABA-and-glycine-receptor-like-subunit-of-Drosophila (Grd):

Annotation Number : CG7446
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001134
Gbrowse : chr3L:17822057-17831993 (+) // 100.0 //
Probeset : 1627579_at
Accessions : protein= NP_524131;, nucleotide= NM_079407;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred
FlyMine data for FBgn0001134.
Homophila reports that CG7446 is a close match (6e-25) to human gene CAE2;ECA2;GABRG2;GEFSP3 (NP_944493), a gene associated with Epilepsy, childhood absence, 2, 607681 (3);Epilepsy, generalized, with febrile seizures plus, type 3, 604233 (3);Febrile convulsions, familial, 8, 611277 (3);Myoclonic epilepsy, severe, of infancy, 607208 (3).
TRiP has 2 RNAi stocks for FBgn0001134 available for purchase.
VDRC has 1 RNAi stocks for FBgn0001134 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 11 of 4 4.80Up
Head2 ± 10 of 4 0.90None
Eye5 ± 11 of 4 2.00None
Thoracicoabdominal ganglion4 ± 10 of 4 1.50None
Salivary gland4 ± 10 of 4 1.44None
Crop3 ± 10 of 4 1.10None
Midgut1 ± 00 of 4 0.60None
Tubule2 ± 00 of 4 0.80None
Hindgut2 ± 10 of 4 0.90None
Heart1 ± 00 of 4 0.61None
Fat body2 ± 20 of 4 0.77None
Ovary1 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.60None
Male accessory glands6 ± 10 of 4 2.40None
Virgin spermatheca1 ± 00 of 4 0.45None
Mated spermatheca0 ± 00 of 4 0.25None
Adult carcass3 ± 20 of 4 1.30None
Larval CNS2 ± 10 of 4 0.83None
Larval Salivary gland3 ± 10 of 4 1.12None
Larval midgut2 ± 00 of 4 0.93None
Larval tubule3 ± 10 of 4 1.00None
Larval hindgut0 ± 00 of 4 0.27None
Larval fat body2 ± 10 of 4 0.90None
Larval trachea1 ± 00 of 4 0.37None
Larval carcass3 ± 10 of 4 1.19None
S2 cells (growing)0 ± 00 of 4 0.28None
Whole fly2 ± 10 of 4

Looking for FBgn0001134. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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