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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0001137 through 18771 annotations produced 1 hits

(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG17610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : grk
Gbrowse :
Probeset : 1627656_at
Accessions : protein= P42287, nucleotide=
FlyMine data for grk.
BioGrid reports that CG17610 interacts with CG5848 CG3218 CG14884 CG8440 CG14228 CG9375 CG9375 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG12283 CG1004 CG33166 CG33166 .

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 13 of 4 0.10Down
Head86 44 of 4 1.10None
Eye10 14 of 4 0.14Down
Thoracicoabdominal ganglion9 12 of 4 0.10Down
Salivary gland17 20 of 4 0.22Down
Crop328 64 of 4 4.30Up
Midgut19 24 of 4 0.20Down
Tubule5 00 of 4 0.10Down
Hindgut169 44 of 4 2.20Up
Heart237 154 of 4 3.08Up
Fat body24 34 of 4 0.32Down
Ovary104 34 of 4 1.40Up
Testis16 14 of 4 0.20Down
Male accessory glands62 34 of 4 0.80None
Virgin spermatheca28 04 of 4 0.37Down
Mated spermatheca44 54 of 4 0.57Down
Adult carcass179 74 of 4 2.30Up
Larval CNS16 24 of 4 0.21Down
Larval Salivary gland14 24 of 4 0.19Down
Larval midgut20 04 of 4 0.27Down
Larval tubule22 14 of 4 0.30Down
Larval hindgut96 14 of 4 1.25None
Larval fat body15 34 of 4 0.20Down
Larval trachea9 52 of 4 0.13Down
Larval carcass273 144 of 4 3.54Up
S2 cells (growing)151 164 of 4 1.95Up
Whole fly77 74 of 4

Looking for FBgn0001137. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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