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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0001147 through 18771 annotations produced 1 hits

gooseberry neuro (gsb-n):

Annotation Number : CG2692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001147
Gbrowse : chr2R:20927904-20939850 (-) // 100.0 //
Probeset : 1637031_at
Accessions : protein= NP_523862;, nucleotide= NM_079138;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 //
FlyMine data for FBgn0001147.
BDGP gene expression has embryonic in situ data for gsb-n: 42 pix of staining in 8 body parts.
Homophila reports that CG2692 is a close match (2e-11) to human gene KTCN;PPCD;PPD;RINX;VSX1 (NP_955457), a gene associated with Corneal dystrophy, hereditary polymorphous posterior, 122000 (3);Craniofacial anomalies, empty sella turcica, corneal endothelial changes, and abnormal retinal and auditory bipolar cells (3);Keratoconus, 148300 (3).
BioGrid reports that CG2692 interacts with CG7879 .
TRiP has 1 RNAi stocks for FBgn0001147 available for purchase.
VDRC has 1 RNAi stocks for FBgn0001147 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head3 10 of 4 0.30Down
Eye0 00 of 4 0.05Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland6 30 of 4 0.64None
Crop3 10 of 4 0.40Down
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.20Down
Hindgut1 00 of 4 0.20Down
Heart1 00 of 4 0.12Down
Fat body1 00 of 4 0.11Down
Ovary0 00 of 4 0.00Down
Testis43 54 of 4 4.50Up
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.07Down
Mated spermatheca0 00 of 4 0.08Down
Adult carcass1 00 of 4 0.10Down
Larval CNS24 24 of 4 2.53Up
Larval Salivary gland1 00 of 4 0.10Down
Larval midgut0 00 of 4 0.07Down
Larval tubule2 10 of 4 0.20Down
Larval hindgut1 10 of 4 0.18Down
Larval fat body1 00 of 4 0.10Down
Larval trachea2 10 of 4 0.23Down
Larval carcass6 10 of 4 0.62None
S2 cells (growing)46 24 of 4 4.68Up
Whole fly9 11 of 4

Looking for FBgn0001147. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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