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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001148 through 18771 annotations produced 1 hits



gooseberry (gsb):

Annotation Number : CG3388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001148
Gbrowse : chr2R:20949670-20951985 (+) // 100.0 //
Probeset : 1637639_at
Accessions : protein= NP_523863;, nucleotide= NM_079139;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // non-traceable author statement /// 000563
FlyMine data for FBgn0001148.
BDGP gene expression has embryonic in situ data for gsb: 67 pix of staining in 21 body parts.
Homophila reports that CG3388 is a close match (9e-12) to human gene KTCN;PPCD;PPD;RINX;VSX1 (NP_055403), a gene associated with Corneal dystrophy, hereditary polymorphous posterior, 122000 (3);Craniofacial anomalies, empty sella turcica, corneal endothelial changes, and abnormal retinal and auditory bipolar cells (3);Keratoconus, 148300 (3).
BioGrid reports that CG3388 interacts with CG10798 CG9015 CG3938 CG1464 CG17835 CG6716 CG6716 CG6716 CG4889 .
TRiP has 1 RNAi stocks for FBgn0001148 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001148 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.60None
Head1 00 of 4 0.20None
Eye1 00 of 4 0.22None
Thoracicoabdominal ganglion1 00 of 4 0.30None
Salivary gland7 40 of 4 1.35None
Crop3 10 of 4 0.60None
Midgut3 10 of 4 0.60None
Tubule1 00 of 4 0.30Down
Hindgut2 00 of 4 0.40None
Heart2 00 of 4 0.46None
Fat body4 10 of 4 0.84None
Ovary0 00 of 4 0.10None
Testis1 00 of 4 0.30None
Male accessory glands1 00 of 4 0.20None
Virgin spermatheca1 00 of 4 0.32None
Mated spermatheca1 00 of 4 0.24None
Adult carcass3 10 of 4 0.60None
Larval CNS11 23 of 4 2.25None
Larval Salivary gland2 20 of 4 0.55None
Larval midgut1 00 of 4 0.24None
Larval tubule2 10 of 4 0.50None
Larval hindgut3 10 of 4 0.67None
Larval fat body3 20 of 4 0.70None
Larval trachea1 10 of 4 0.22None
Larval carcass3 00 of 4 0.71None
S2 cells (growing)86 54 of 416.35Up
Whole fly5 20 of 4

Looking for FBgn0001148. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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