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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0001149 through 18771 annotations produced 1 hits

CG10045 Glutathione S-transferase (GstD1):

Annotation Number : CG10045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001149
Gbrowse : chr3R:8193531-8194987 (-) // 100.0 //
Probeset : 1628353_at
Accessions : protein= NP_001034042; /// NP_524326;, nucleotide= NM_001038953; /// NM_079602;
Interpro : 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activit
FlyMine data for FBgn0001149.
BDGP gene expression has embryonic in situ data for GstD1: 30 pix of staining in 12 body parts.
BioGrid reports that CG10045 interacts with CG10200 CG4922 CG14718 CG17819 CG5545 CG6049 CG9757 CG9784 .
TRiP has 1 RNAi stocks for FBgn0001149 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001149 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1727 184 of 4 0.70Down
Head2603 904 of 4 1.10None
Eye1569 704 of 4 0.64Down
Thoracicoabdominal ganglion2109 394 of 4 0.90Down
Salivary gland2372 1224 of 4 0.97None
Crop4093 1744 of 4 1.70Up
Midgut3151 884 of 4 1.30Up
Tubule4079 2614 of 4 1.70Up
Hindgut3481 834 of 4 1.40Up
Heart2356 614 of 4 0.96None
Fat body1241 1254 of 4 0.51Down
Ovary2887 384 of 4 1.20Up
Testis1885 584 of 4 0.80Down
Male accessory glands3478 2344 of 4 1.40Up
Virgin spermatheca3220 844 of 4 1.31Up
Mated spermatheca3217 1564 of 4 1.31Up
Adult carcass2692 714 of 4 1.10None
Larval CNS1462 544 of 4 0.60Down
Larval Salivary gland8435 3394 of 4 3.44Up
Larval midgut1832 1294 of 4 0.75Down
Larval tubule4359 1834 of 4 1.80Up
Larval hindgut3499 1884 of 4 1.43Up
Larval fat body4926 5834 of 4 2.00Up
Larval trachea4977 2364 of 4 2.03Up
Larval carcass4100 3224 of 4 1.67Up
S2 cells (growing)1925 404 of 4 0.79Down
Whole fly2449 1004 of 4

Looking for FBgn0001149. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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