FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0001150 through 18771 annotations produced 2 hits

/// giant (CG4575 /// gt):

Annotation Number : CG4575
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001150 /// FBgn0029920
Gbrowse : chrX:6844542-6845046 (+) // 100.0 //
Probeset : 1632684_s_at
Accessions : protein= NP_525049; /// NP_572367;, nucleotide= NM_080310; /// NM_132139;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
FlyMine data for FBgn0001150 /// FBgn0029920.
BioGrid reports that CG4575 interacts with CG5354 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	39 ± 5	4 of 4	14.00	Up
Head	8 ± 2	0 of 4	3.00	None
Eye	12 ± 3	1 of 4	4.38	None
Thoracicoabdominal ganglion	20 ± 3	0 of 4	7.40	Up
Salivary gland	11 ± 2	0 of 4	4.04	None
Crop	1 ± 0	0 of 4	0.60	None
Midgut	5 ± 2	0 of 4	1.90	None
Tubule	4 ± 0	0 of 4	1.70	Up
Hindgut	4 ± 1	0 of 4	1.60	None
Heart	5 ± 0	0 of 4	2.09	None
Fat body	10 ± 5	0 of 4	3.59	None
Ovary	3 ± 0	0 of 4	1.10	None
Testis	2 ± 0	0 of 4	0.90	None
Male accessory glands	6 ± 1	0 of 4	2.40	Up
Virgin spermatheca	5 ± 1	0 of 4	1.82	None
Mated spermatheca	4 ± 1	0 of 4	1.46	None
Adult carcass	7 ± 2	0 of 4	2.80	None
Larval CNS	6 ± 1	0 of 4	2.19	Up
Larval Salivary gland	4 ± 2	0 of 4	1.52	None
Larval midgut	6 ± 1	0 of 4	2.24	None
Larval tubule	4 ± 1	0 of 4	1.70	None
Larval hindgut	4 ± 2	0 of 4	1.60	None
Larval fat body	3 ± 0	0 of 4	1.10	None
Larval trachea	6 ± 4	0 of 4	2.35	None
Larval carcass	4 ± 0	0 of 4	1.44	None
S2 cells (growing)	6 ± 1	0 of 4	2.44	None
Whole fly	2 ± 1	0 of 4

chrX:2321139-2322996 (-) // 100.0 // (giant):

Annotation Number : CG7952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629953_at
Accessions : protein= , nucleotide= NP_525049;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0
Interpro : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
FlyMine data for full length.
BioGrid reports that CG7952 interacts with CG1389 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	43 ± 2	4 of 4	11.00	Up
Head	7 ± 0	3 of 4	1.80	None
Eye	12 ± 0	4 of 4	3.06	Up
Thoracicoabdominal ganglion	30 ± 1	4 of 4	7.70	Up
Salivary gland	8 ± 2	0 of 4	2.09	None
Crop	4 ± 1	0 of 4	1.10	None
Midgut	3 ± 1	0 of 4	0.80	None
Tubule	5 ± 0	0 of 4	1.30	Up
Hindgut	3 ± 1	0 of 4	0.90	None
Heart	4 ± 1	1 of 4	1.06	None
Fat body	4 ± 3	1 of 4	1.04	None
Ovary	2 ± 0	1 of 4	0.50	None
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	8 ± 3	1 of 4	2.20	None
Virgin spermatheca	4 ± 0	1 of 4	1.18	None
Mated spermatheca	5 ± 2	1 of 4	1.47	None
Adult carcass	4 ± 1	0 of 4	1.20	None
Larval CNS	9 ± 2	4 of 4	2.36	Up
Larval Salivary gland	5 ± 1	1 of 4	1.39	None
Larval midgut	4 ± 1	1 of 4	1.07	None
Larval tubule	5 ± 2	0 of 4	1.30	None
Larval hindgut	2 ± 0	0 of 4	0.55	None
Larval fat body	10 ± 0	1 of 4	2.60	Up
Larval trachea	5 ± 2	3 of 4	1.46	None
Larval carcass	3 ± 0	0 of 4	0.89	None
S2 cells (growing)	6 ± 0	1 of 4	1.70	None
Whole fly	4 ± 1	1 of 4

Looking for FBgn0001150. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720