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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001169 through 18771 annotations produced 2 hits



hairless (H):

Annotation Number : CG5460
Flybase ID : FBgn0001169
Gbrowse : chr3R:16447664-16454637 (+) // 100.0 //
Probeset : 1639839_s_at
Accessions : protein= NP_524418; /// NP_732533; /// NP_732534; /// NP_732535;, nucleotide= NM_079694; /// NM_169907; /// NM_169908; /// NM_169909;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005634 //
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // infer
FlyMine data for FBgn0001169.
BioGrid reports that CG5460 interacts with CG7583 CG8942 CG3166 CG3166 CG8376 CG8285 CG3096 CG2534 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG9885 CG3929 CG1007 CG1007 CG1007 CG1007 CG8365 CG8384 CG8384 CG8384 CG8384 CG8384 CG8384 CG12084 CG17667 CG2446 CG2446 CG7583 CG5814 CG5201 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG3903 CG4264 CG4903 CG4903 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3329 CG4097 CG18803 CG4385 CG6127 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG4244 CG1520 CG3796 CG10393 CG3411 CG5876 CG9854 CG11312 CG11312 CG7147 CG3839 CG4162 CG5738 CG6099 CG8118 CG8118 CG8118 CG8118 CG11450 CG11988 CG11988 CG11988 CG11988 CG11988 CG11988 CG7892 CG7892 CG3779 CG3779 CG3779 CG3779 CG3779 CG3779 CG31481 CG4444 CG6775 CG1004 CG6348 CG1891 CG3827 CG1903 CG1903 CG18497 CG18497 CG5408 CG5408 CG10491 CG10491 CG31774 .
TRiP has 2 RNAi stocks for FBgn0001169 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001169 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 34 of 4 2.40Up
Head49 44 of 4 1.40Up
Eye52 24 of 4 1.54Up
Thoracicoabdominal ganglion79 44 of 4 2.30Up
Salivary gland97 54 of 4 2.84Up
Crop60 14 of 4 1.80Up
Midgut38 14 of 4 1.10None
Tubule29 04 of 4 0.90Down
Hindgut44 14 of 4 1.30Up
Heart46 44 of 4 1.36None
Fat body101 164 of 4 2.96Up
Ovary42 14 of 4 1.20Up
Testis10 14 of 4 0.30Down
Male accessory glands134 84 of 4 3.90Up
Virgin spermatheca101 44 of 4 2.95Up
Mated spermatheca107 64 of 4 3.13Up
Adult carcass39 24 of 4 1.10None
Larval CNS380 564 of 411.10Up
Larval Salivary gland177 64 of 4 5.17Up
Larval midgut51 74 of 4 1.49None
Larval tubule84 34 of 4 2.50Up
Larval hindgut93 54 of 4 2.73Up
Larval fat body106 94 of 4 3.10Up
Larval trachea72 54 of 4 2.12Up
Larval carcass90 24 of 4 2.65Up
S2 cells (growing)137 54 of 4 4.01Up
Whole fly34 24 of 4



hairless (H):

Annotation Number : CG5460
Flybase ID : FBgn0001169
Gbrowse : chr3R:16447664-16452973 (+) // 100.0 //
Probeset : 1638568_s_at
Accessions : protein= NP_524418; /// NP_732533; /// NP_732534; /// NP_732535;, nucleotide= NM_079694; /// NM_169907; /// NM_169908; /// NM_169909;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005634 //
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // infer
FlyMine data for FBgn0001169.
BioGrid reports that CG5460 interacts with CG7583 CG8942 CG3166 CG3166 CG8376 CG8285 CG3096 CG2534 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG9885 CG3929 CG1007 CG1007 CG1007 CG1007 CG8365 CG8384 CG8384 CG8384 CG8384 CG8384 CG8384 CG12084 CG17667 CG2446 CG2446 CG7583 CG5814 CG5201 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG3903 CG4264 CG4903 CG4903 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3329 CG4097 CG18803 CG4385 CG6127 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG4244 CG1520 CG3796 CG10393 CG3411 CG5876 CG9854 CG11312 CG11312 CG7147 CG3839 CG4162 CG5738 CG6099 CG8118 CG8118 CG8118 CG8118 CG11450 CG11988 CG11988 CG11988 CG11988 CG11988 CG11988 CG7892 CG7892 CG3779 CG3779 CG3779 CG3779 CG3779 CG3779 CG31481 CG4444 CG6775 CG1004 CG6348 CG1891 CG3827 CG1903 CG1903 CG18497 CG18497 CG5408 CG5408 CG10491 CG10491 CG31774 .
TRiP has 2 RNAi stocks for FBgn0001169 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001169 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 14 of 4 1.10None
Head38 14 of 4 0.30Down
Eye43 54 of 4 0.36Down
Thoracicoabdominal ganglion79 84 of 4 0.70Down
Salivary gland53 104 of 4 0.45Down
Crop62 14 of 4 0.50Down
Midgut44 14 of 4 0.40Down
Tubule21 13 of 4 0.20Down
Hindgut46 34 of 4 0.40Down
Heart57 64 of 4 0.48Down
Fat body81 234 of 4 0.68Down
Ovary379 94 of 4 3.20Up
Testis55 34 of 4 0.50Down
Male accessory glands79 74 of 4 0.70Down
Virgin spermatheca35 34 of 4 0.29Down
Mated spermatheca43 24 of 4 0.36Down
Adult carcass49 84 of 4 0.40Down
Larval CNS160 244 of 4 1.33Up
Larval Salivary gland116 134 of 4 0.97None
Larval midgut30 14 of 4 0.25Down
Larval tubule78 54 of 4 0.70Down
Larval hindgut58 94 of 4 0.48Down
Larval fat body82 64 of 4 0.70Down
Larval trachea112 124 of 4 0.93None
Larval carcass38 54 of 4 0.32Down
S2 cells (growing)135 54 of 4 1.13None
Whole fly120 74 of 4

Looking for FBgn0001169. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime