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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001180 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:4517037-4523540 (-) // 100.0 //):

Annotation Number : CG9786
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr3-48
Gbrowse :
Probeset : 1624490_s_at
Accessions : protein= , nucleotide=
Interpro : "0001763 // morphogenesis of a branching structure // traceable author statement /// 0007275 // multicellular organismal
FlyMine data for chr3-48.
Homophila reports that CG9786 is a close match (3e-11) to human gene MRX92;ZNF674 (NP_001034980), a gene associated with Mental retardation, X-linked-92 (3).
BioGrid reports that CG9786 interacts with CG1034 CG1034 CG1034 CG1034 CG1034 CG1034 CG2047 CG3340 CG1034 CG1034 CG4608 CG4717 CG12058 CG5637 CG5637 CG5637 CG5637 CG5637 CG17743 CG6705 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 0.10Down
Head12 ± 14 of 4 0.10Down
Eye2 ± 11 of 4 0.02Down
Thoracicoabdominal ganglion22 ± 24 of 4 0.20Down
Salivary gland10 ± 20 of 4 0.07Down
Crop96 ± 94 of 4 0.70Down
Midgut13 ± 14 of 4 0.10Down
Tubule6 ± 20 of 4 0.00Down
Hindgut33 ± 24 of 4 0.20Down
Heart20 ± 14 of 4 0.14Down
Fat body7 ± 33 of 4 0.05Down
Ovary727 ± 124 of 4 5.00Up
Testis6 ± 04 of 4 0.00Down
Male accessory glands21 ± 14 of 4 0.10Down
Virgin spermatheca10 ± 14 of 4 0.07Down
Mated spermatheca11 ± 23 of 4 0.08Down
Adult carcass32 ± 34 of 4 0.20Down
Larval CNS11 ± 24 of 4 0.08Down
Larval Salivary gland3 ± 10 of 4 0.03Down
Larval midgut4 ± 00 of 4 0.03Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut2 ± 11 of 4 0.02Down
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.00Down
Larval carcass3 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly145 ± 134 of 4

Looking for FBgn0001180. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime