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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001185 through 18771 annotations produced 1 hits



chr2L:16677209-16679932 (+) // 100.0 // (lethal(2)maternal):

Annotation Number : CG4694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632423_at
Accessions : protein= , nucleotide= NP_476572;
Pathway : "0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0007530 // sex
Interpro : primary response to X:A ratio // traceable author statement /// 0007548 // sex differentiation // traceable author stat
FlyMine data for full length.
BioGrid reports that CG4694 interacts with CG7171 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 64 of 4 5.20Up
Head15 24 of 4 2.00Up
Eye14 04 of 4 1.85Up
Thoracicoabdominal ganglion34 04 of 4 4.40Up
Salivary gland26 42 of 4 3.38Up
Crop20 33 of 4 2.70Up
Midgut8 22 of 4 1.00None
Tubule20 14 of 4 2.70Up
Hindgut17 14 of 4 2.30Up
Heart7 21 of 4 1.00None
Fat body38 44 of 4 4.93Up
Ovary7 04 of 4 1.00None
Testis4 02 of 4 0.60None
Male accessory glands21 34 of 4 2.70Up
Virgin spermatheca22 14 of 4 2.85Up
Mated spermatheca26 04 of 4 3.50Up
Adult carcass15 14 of 4 2.10Up
Larval CNS48 04 of 4 6.31Up
Larval Salivary gland21 24 of 4 2.75Up
Larval midgut11 12 of 4 1.44None
Larval tubule23 24 of 4 3.00Up
Larval hindgut19 24 of 4 2.54Up
Larval fat body16 23 of 4 2.10Up
Larval trachea9 24 of 4 1.19None
Larval carcass11 13 of 4 1.55None
S2 cells (growing)14 04 of 4 1.91Up
Whole fly7 13 of 4

Looking for FBgn0001185. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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