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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001189 through 18771 annotations produced 1 hits



singed wings (hfw):

Annotation Number : CG3095
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001189
Gbrowse : chrX:1563625-1567144 (+) // 100.0 //
Probeset : 1634614_at
Accessions : protein= NP_569933;, nucleotide= NM_130577;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0001189.
BioGrid reports that CG3095 interacts with CG9025 .
TRiP has 1 RNAi stocks for FBgn0001189 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001189 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 24 of 4 0.50Down
Head100 44 of 4 1.10None
Eye98 34 of 4 1.06None
Thoracicoabdominal ganglion74 54 of 4 0.80Down
Salivary gland256 94 of 4 2.78Up
Crop205 44 of 4 2.20Up
Midgut219 84 of 4 2.40Up
Tubule169 24 of 4 1.80Up
Hindgut127 34 of 4 1.40Up
Heart116 64 of 4 1.26Up
Fat body187 174 of 4 2.02Up
Ovary114 44 of 4 1.20Up
Testis47 24 of 4 0.50Down
Male accessory glands408 184 of 4 4.40Up
Virgin spermatheca266 84 of 4 2.88Up
Mated spermatheca272 114 of 4 2.95Up
Adult carcass148 54 of 4 1.60Up
Larval CNS83 74 of 4 0.90None
Larval Salivary gland159 84 of 4 1.73Up
Larval midgut274 84 of 4 2.97Up
Larval tubule161 54 of 4 1.80Up
Larval hindgut251 94 of 4 2.72Up
Larval fat body191 144 of 4 2.10Up
Larval trachea157 84 of 4 1.70Up
Larval carcass117 64 of 4 1.27Up
S2 cells (growing)188 64 of 4 2.03Up
Whole fly92 54 of 4

Looking for FBgn0001189. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime