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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001206 through 18771 annotations produced 1 hits



Hybrid male rescue (Hmr):

Annotation Number : CG1619
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001206
Gbrowse : chrX:10484951-10489849 (-) // 100.0 //
Probeset : 1641024_at
Accessions : protein= NP_572637;, nucleotide= NM_132409;
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding t
FlyMine data for FBgn0001206.
BioGrid reports that CG1619 interacts with CG8793 .
TRiP has 1 RNAi stocks for FBgn0001206 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001206 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 34 of 4 0.70None
Head34 ± 04 of 4 0.40Down
Eye28 ± 24 of 4 0.30Down
Thoracicoabdominal ganglion51 ± 44 of 4 0.50Down
Salivary gland47 ± 34 of 4 0.49Down
Crop36 ± 34 of 4 0.40Down
Midgut33 ± 11 of 4 0.40Down
Tubule19 ± 21 of 4 0.20Down
Hindgut33 ± 24 of 4 0.30Down
Heart17 ± 24 of 4 0.18Down
Fat body26 ± 43 of 4 0.27Down
Ovary224 ± 24 of 4 2.30Up
Testis44 ± 24 of 4 0.50Down
Male accessory glands41 ± 34 of 4 0.40Down
Virgin spermatheca16 ± 22 of 4 0.18Down
Mated spermatheca25 ± 04 of 4 0.27Down
Adult carcass32 ± 40 of 4 0.30Down
Larval CNS145 ± 54 of 4 1.52Up
Larval Salivary gland44 ± 14 of 4 0.46Down
Larval midgut30 ± 10 of 4 0.32Down
Larval tubule20 ± 01 of 4 0.20Down
Larval hindgut36 ± 24 of 4 0.38Down
Larval fat body30 ± 14 of 4 0.30Down
Larval trachea44 ± 64 of 4 0.46Down
Larval carcass37 ± 34 of 4 0.39Down
S2 cells (growing)52 ± 44 of 4 0.54Down
Whole fly95 ± 94 of 4

Looking for FBgn0001206. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime