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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001215 through 18771 annotations produced 2 hits



hnRNA-binding protein 1 (Hrb98DE):

Annotation Number : CG9983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001215
Gbrowse : chr3R:24426108-24431499 (+) // 100.0 //
Probeset : 1638912_s_at
Accessions : protein= NP_524543; /// NP_733249; /// NP_733250; /// NP_733251; /// NP_733252; /// NP_733253;, nucleotide= NM_079819; /// NM_170370; /// NM_170371; /// NM_170372; /// NM_170373; /// NM_170374;
Pathway : via spliceosome // inferred from mutant phenotype /// 0033119 // negative regulation of RNA splicing // inferred from m
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005703 // polytene chromosome puff // inferred from direc
FlyMine data for FBgn0001215.
BDGP gene expression has embryonic in situ data for Hrb98DE: 4 pix of staining in 1 body parts.
Homophila reports that CG9983 is a close match (2e-16) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
TRiP has 2 RNAi stocks for FBgn0001215 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001215 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain576 364 of 4 7.80Up
Head98 64 of 4 1.30Up
Eye213 74 of 4 2.91Up
Thoracicoabdominal ganglion408 254 of 4 5.60Up
Salivary gland223 104 of 4 3.04Up
Crop182 94 of 4 2.50Up
Midgut108 124 of 4 1.50None
Tubule159 154 of 4 2.20Up
Hindgut127 54 of 4 1.70Up
Heart76 94 of 4 1.04None
Fat body84 114 of 4 1.15None
Ovary60 44 of 4 0.80None
Testis15 23 of 4 0.20Down
Male accessory glands388 184 of 4 5.30Up
Virgin spermatheca213 114 of 4 2.90Up
Mated spermatheca225 224 of 4 3.07Up
Adult carcass103 84 of 4 1.40Up
Larval CNS283 214 of 4 3.85Up
Larval Salivary gland108 54 of 4 1.48Up
Larval midgut63 10 of 4 0.86None
Larval tubule65 44 of 4 0.90None
Larval hindgut74 64 of 4 1.01None
Larval fat body110 74 of 4 1.50Up
Larval trachea183 104 of 4 2.50Up
Larval carcass63 44 of 4 0.86None
S2 cells (growing)154 34 of 4 2.11Up
Whole fly73 44 of 4



hnRNA-binding protein 1 (Hrb98DE):

Annotation Number : CG9983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001215
Gbrowse : chr3R:24425528-24430817 (+) // 100.0 //
Probeset : 1640169_s_at
Accessions : protein= NP_524543; /// NP_733249; /// NP_733250; /// NP_733251; /// NP_733252; /// NP_733253;, nucleotide= NM_079819; /// NM_170370; /// NM_170371; /// NM_170372; /// NM_170373; /// NM_170374;
Pathway : via spliceosome // inferred from mutant phenotype /// 0033119 // negative regulation of RNA splicing // inferred from m
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005703 // polytene chromosome puff // inferred from direc
FlyMine data for FBgn0001215.
BDGP gene expression has embryonic in situ data for Hrb98DE: 4 pix of staining in 1 body parts.
Homophila reports that CG9983 is a close match (2e-16) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
TRiP has 2 RNAi stocks for FBgn0001215 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001215 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1255 674 of 4 1.30Up
Head705 404 of 4 0.70Down
Eye1103 644 of 4 1.14None
Thoracicoabdominal ganglion920 334 of 4 0.90None
Salivary gland649 144 of 4 0.67Down
Crop791 154 of 4 0.80Down
Midgut644 164 of 4 0.70Down
Tubule677 324 of 4 0.70Down
Hindgut838 354 of 4 0.90None
Heart569 164 of 4 0.59Down
Fat body498 304 of 4 0.51Down
Ovary1765 254 of 4 1.80Up
Testis814 54 of 4 0.80None
Male accessory glands1115 404 of 4 1.10None
Virgin spermatheca698 274 of 4 0.72Down
Mated spermatheca690 264 of 4 0.71Down
Adult carcass482 124 of 4 0.50Down
Larval CNS1636 464 of 4 1.69Up
Larval Salivary gland981 694 of 4 1.01None
Larval midgut413 204 of 4 0.43Down
Larval tubule499 124 of 4 0.50Down
Larval hindgut754 834 of 4 0.78None
Larval fat body566 684 of 4 0.60Down
Larval trachea1175 1584 of 4 1.21None
Larval carcass980 1094 of 4 1.01None
S2 cells (growing)1175 154 of 4 1.21Up
Whole fly970 584 of 4

Looking for FBgn0001215. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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