FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0001215 through 18771 annotations produced 2 hits

hnRNA-binding protein 1 (Hrb98DE):

Annotation Number : CG9983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001215
Gbrowse : chr3R:24425528-24430817 (+) // 100.0 //
Probeset : 1640169_s_at
Accessions : protein= NP_524543; /// NP_733249; /// NP_733250; /// NP_733251; /// NP_733252; /// NP_733253;, nucleotide= NM_079819; /// NM_170370; /// NM_170371; /// NM_170372; /// NM_170373; /// NM_170374;
Pathway : via spliceosome // inferred from mutant phenotype /// 0033119 // negative regulation of RNA splicing // inferred from m
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005703 // polytene chromosome puff // inferred from direc
FlyMine data for FBgn0001215.
BDGP gene expression has embryonic in situ data for Hrb98DE: 4 pix of staining in 1 body parts.
Homophila reports that CG9983 is a close match (2e-16) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
TRiP has 2 RNAi stocks for FBgn0001215 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001215 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1255 ± 67	4 of 4	1.30	Up
Head	705 ± 40	4 of 4	0.70	Down
Eye	1103 ± 64	4 of 4	1.14	None
Thoracicoabdominal ganglion	920 ± 33	4 of 4	0.90	None
Salivary gland	649 ± 14	4 of 4	0.67	Down
Crop	791 ± 15	4 of 4	0.80	Down
Midgut	644 ± 16	4 of 4	0.70	Down
Tubule	677 ± 32	4 of 4	0.70	Down
Hindgut	838 ± 35	4 of 4	0.90	None
Heart	569 ± 16	4 of 4	0.59	Down
Fat body	498 ± 30	4 of 4	0.51	Down
Ovary	1765 ± 25	4 of 4	1.80	Up
Testis	814 ± 5	4 of 4	0.80	None
Male accessory glands	1115 ± 40	4 of 4	1.10	None
Virgin spermatheca	698 ± 27	4 of 4	0.72	Down
Mated spermatheca	690 ± 26	4 of 4	0.71	Down
Adult carcass	482 ± 12	4 of 4	0.50	Down
Larval CNS	1636 ± 46	4 of 4	1.69	Up
Larval Salivary gland	981 ± 69	4 of 4	1.01	None
Larval midgut	413 ± 20	4 of 4	0.43	Down
Larval tubule	499 ± 12	4 of 4	0.50	Down
Larval hindgut	754 ± 83	4 of 4	0.78	None
Larval fat body	566 ± 68	4 of 4	0.60	Down
Larval trachea	1175 ± 158	4 of 4	1.21	None
Larval carcass	980 ± 109	4 of 4	1.01	None
S2 cells (growing)	1175 ± 15	4 of 4	1.21	Up
Whole fly	970 ± 58	4 of 4

hnRNA-binding protein 1 (Hrb98DE):

Annotation Number : CG9983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001215
Gbrowse : chr3R:24426108-24431499 (+) // 100.0 //
Probeset : 1638912_s_at
Accessions : protein= NP_524543; /// NP_733249; /// NP_733250; /// NP_733251; /// NP_733252; /// NP_733253;, nucleotide= NM_079819; /// NM_170370; /// NM_170371; /// NM_170372; /// NM_170373; /// NM_170374;
Pathway : via spliceosome // inferred from mutant phenotype /// 0033119 // negative regulation of RNA splicing // inferred from m
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005703 // polytene chromosome puff // inferred from direc
FlyMine data for FBgn0001215.
BDGP gene expression has embryonic in situ data for Hrb98DE: 4 pix of staining in 1 body parts.
Homophila reports that CG9983 is a close match (2e-16) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
TRiP has 2 RNAi stocks for FBgn0001215 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001215 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	576 ± 36	4 of 4	7.80	Up
Head	98 ± 6	4 of 4	1.30	Up
Eye	213 ± 7	4 of 4	2.91	Up
Thoracicoabdominal ganglion	408 ± 25	4 of 4	5.60	Up
Salivary gland	223 ± 10	4 of 4	3.04	Up
Crop	182 ± 9	4 of 4	2.50	Up
Midgut	108 ± 12	4 of 4	1.50	None
Tubule	159 ± 15	4 of 4	2.20	Up
Hindgut	127 ± 5	4 of 4	1.70	Up
Heart	76 ± 9	4 of 4	1.04	None
Fat body	84 ± 11	4 of 4	1.15	None
Ovary	60 ± 4	4 of 4	0.80	None
Testis	15 ± 2	3 of 4	0.20	Down
Male accessory glands	388 ± 18	4 of 4	5.30	Up
Virgin spermatheca	213 ± 11	4 of 4	2.90	Up
Mated spermatheca	225 ± 22	4 of 4	3.07	Up
Adult carcass	103 ± 8	4 of 4	1.40	Up
Larval CNS	283 ± 21	4 of 4	3.85	Up
Larval Salivary gland	108 ± 5	4 of 4	1.48	Up
Larval midgut	63 ± 1	0 of 4	0.86	None
Larval tubule	65 ± 4	4 of 4	0.90	None
Larval hindgut	74 ± 6	4 of 4	1.01	None
Larval fat body	110 ± 7	4 of 4	1.50	Up
Larval trachea	183 ± 10	4 of 4	2.50	Up
Larval carcass	63 ± 4	4 of 4	0.86	None
S2 cells (growing)	154 ± 3	4 of 4	2.11	Up
Whole fly	73 ± 4	4 of 4

Looking for FBgn0001215. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720