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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001218 through 18771 annotations produced 1 hits



immunoglobulin binding protein (Hsc70-3):

Annotation Number : CG4147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001218
Gbrowse : chrX:11695728-11701212 (-) // 100.0 //
Probeset : 1635423_s_at
Accessions : protein= NP_511132; /// NP_727563; /// NP_727564; /// NP_727565;, nucleotide= NM_078577; /// NM_167306; /// NM_167307; /// NM_167308;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // non-traceable aut
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0001218.
BioGrid reports that CG4147 interacts with CG9455 .
TRiP has 1 RNAi stocks for FBgn0001218 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001218 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1299 284 of 4 0.80None
Head1581 1504 of 4 0.90None
Eye1777 1014 of 4 1.06None
Thoracicoabdominal ganglion1593 774 of 4 0.90None
Salivary gland3764 2734 of 4 2.24Up
Crop1837 964 of 4 1.10None
Midgut1579 484 of 4 0.90None
Tubule3166 1354 of 4 1.90Up
Hindgut1050 514 of 4 0.60None
Heart2447 1344 of 4 1.46Up
Fat body2679 2044 of 4 1.60Up
Ovary2070 894 of 4 1.20None
Testis490 94 of 4 0.30Down
Male accessory glands6790 454 of 4 4.00Up
Virgin spermatheca3531 654 of 4 2.10Up
Mated spermatheca3624 2314 of 4 2.16Up
Adult carcass1625 564 of 4 1.00None
Larval CNS1564 1014 of 4 0.93None
Larval Salivary gland8181 2444 of 4 4.87Up
Larval midgut2183 564 of 4 1.30None
Larval tubule3428 3114 of 4 2.00Up
Larval hindgut1917 1534 of 4 1.14None
Larval fat body5449 5514 of 4 3.20Up
Larval trachea1610 5054 of 4 0.96None
Larval carcass2966 1814 of 4 1.77Up
S2 cells (growing)2888 194 of 4 1.72Up
Whole fly1679 2224 of 4

Looking for FBgn0001218. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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