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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001220 through 18771 annotations produced 1 hits



Heat shock protein cognate 5 (Hsc70-5):

Annotation Number : CG8542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001220
Gbrowse : chr2R:10140102-10143697 (-) // 100.0 //
Probeset : 1627109_at
Accessions : protein= NP_523741;, nucleotide= NM_079017;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceabl
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0001220.
BDGP gene expression has embryonic in situ data for Hsc70-5: 12 pix of staining in 9 body parts.
BioGrid reports that CG8542 interacts with CG8863 .
VDRC has 2 RNAi stocks for FBgn0001220 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain950 234 of 4 0.90None
Head1039 514 of 4 1.00None
Eye880 904 of 4 0.87None
Thoracicoabdominal ganglion1399 614 of 4 1.40Up
Salivary gland1191 484 of 4 1.18None
Crop961 404 of 4 1.00None
Midgut977 304 of 4 1.00None
Tubule1351 414 of 4 1.30Up
Hindgut1149 314 of 4 1.10None
Heart1198 594 of 4 1.19None
Fat body1703 844 of 4 1.69Up
Ovary1341 254 of 4 1.30Up
Testis923 554 of 4 0.90None
Male accessory glands542 384 of 4 0.50Down
Virgin spermatheca1212 554 of 4 1.20Up
Mated spermatheca1352 924 of 4 1.34Up
Adult carcass1203 504 of 4 1.20Up
Larval CNS1052 444 of 4 1.04None
Larval Salivary gland1243 404 of 4 1.23Up
Larval midgut1229 1244 of 4 1.22None
Larval tubule543 314 of 4 0.50Down
Larval hindgut1692 1254 of 4 1.68Up
Larval fat body642 414 of 4 0.60Down
Larval trachea993 744 of 4 0.98None
Larval carcass1122 1224 of 4 1.11None
S2 cells (growing)1523 404 of 4 1.51Up
Whole fly1008 564 of 4

Looking for FBgn0001220. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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