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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001223 through 18771 annotations produced 2 hits



heat shock protein hsp22 /// Gene 2 (Hsp22 /// Hsp67Bb):

Annotation Number : CG32041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001223 /// FBgn0001228
Gbrowse : chr3L:9366030-9368070 (+) // 100.0 //
Probeset : 1629061_s_at
Accessions : protein= NP_001027114; /// NP_001027115; /// NP_001027116; /// NP_001027117;, nucleotide= NM_001031943; /// NM_001031944; /// NM_001031945; /// NM_001031946;
FlyMine data for FBgn0001223 /// FBgn0001228.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 64 of 4 0.40Down
Head69 104 of 4 0.80None
Eye286 884 of 4 3.28None
Thoracicoabdominal ganglion27 32 of 4 0.30Down
Salivary gland7 50 of 4 0.09Down
Crop131 84 of 4 1.50Up
Midgut49 63 of 4 0.60Down
Tubule1604 3744 of 418.40Up
Hindgut26 31 of 4 0.30Down
Heart117 154 of 4 1.35None
Fat body22 10 of 4 0.26Down
Ovary125 54 of 4 1.40Up
Testis36 54 of 4 0.40Down
Male accessory glands14 40 of 4 0.20Down
Virgin spermatheca11 60 of 4 0.14Down
Mated spermatheca67 231 of 4 0.77None
Adult carcass174 104 of 4 2.00Up
Larval CNS51 224 of 4 0.59Down
Larval Salivary gland67 273 of 4 0.78None
Larval midgut63 183 of 4 0.72None
Larval tubule665 264 of 4 7.60Up
Larval hindgut41 92 of 4 0.47Down
Larval fat body159 334 of 4 1.80None
Larval trachea11 60 of 4 0.13Down
Larval carcass26 40 of 4 0.30Down
S2 cells (growing)181 124 of 4 2.07Up
Whole fly87 64 of 4



heat shock protein hsp22 /// Gene 2 (Hsp22 /// Hsp67Bb):

Annotation Number : CG32041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001223 /// FBgn0001228
Gbrowse : chr3L:9366030-9366749 (+) // 100.0 //
Probeset : 1630487_s_at
Accessions : protein= NP_001027114; /// NP_001027115; /// NP_001027116; /// NP_001027117;, nucleotide= NM_001031943; /// NM_001031944; /// NM_001031945; /// NM_001031946;
FlyMine data for FBgn0001223 /// FBgn0001228.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head4 10 of 4 0.10Down
Eye3 10 of 4 0.06Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland13 30 of 4 0.26Down
Crop4 10 of 4 0.10Down
Midgut1 10 of 4 0.00Down
Tubule334 524 of 4 6.50Up
Hindgut4 10 of 4 0.10Down
Heart8 21 of 4 0.16Down
Fat body6 50 of 4 0.12Down
Ovary6 00 of 4 0.10Down
Testis526 84 of 410.20Up
Male accessory glands9 30 of 4 0.20Down
Virgin spermatheca4 10 of 4 0.08Down
Mated spermatheca7 21 of 4 0.14Down
Adult carcass1 00 of 4 0.00Down
Larval CNS10 10 of 4 0.19Down
Larval Salivary gland534 604 of 410.34Up
Larval midgut1 00 of 4 0.03Down
Larval tubule576 364 of 411.20Up
Larval hindgut105 164 of 4 2.03Up
Larval fat body50 94 of 4 1.00None
Larval trachea13 54 of 4 0.26Down
Larval carcass33 34 of 4 0.66None
S2 cells (growing)2 00 of 4 0.05Down
Whole fly51 74 of 4

Looking for FBgn0001223. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime