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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0001229 through 18771 annotations produced 1 hits



Gene 3 (Hsp67Bc):

Annotation Number : CG4190
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001229
Gbrowse : chr3L:9364817-9365417 (-) // 100.0 //
Probeset : 1638484_at
Accessions : protein= NP_523994;, nucleotide= NM_079270;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0001229.
Homophila reports that CG4190 is a close match (3e-14) to human gene CMT2F;HMN2B;HSP27;HSPB1 (NP_001531), a gene associated with Charcot-Marie-Tooth disease, axonal, type 2F, 606595 (3);Neuropathy, distal hereditary motor, type IIB, 608634 (3).
BioGrid reports that CG4190 interacts with CG9986 .
TRiP has 1 RNAi stocks for FBgn0001229 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 ± 34 of 416.40Up
Head41 ± 14 of 4 3.20Up
Eye5 ± 11 of 4 0.40Down
Thoracicoabdominal ganglion57 ± 24 of 4 4.50Up
Salivary gland11 ± 20 of 4 0.91None
Crop7 ± 21 of 4 0.60None
Midgut8 ± 30 of 4 0.60None
Tubule258 ± 1034 of 420.10Up
Hindgut5 ± 10 of 4 0.40Down
Heart4 ± 21 of 4 0.38Down
Fat body8 ± 41 of 4 0.65None
Ovary1 ± 00 of 4 0.10Down
Testis18 ± 14 of 4 1.40None
Male accessory glands9 ± 10 of 4 0.80None
Virgin spermatheca10 ± 20 of 4 0.83None
Mated spermatheca8 ± 20 of 4 0.64None
Adult carcass5 ± 20 of 4 0.50None
Larval CNS236 ± 364 of 418.39Up
Larval Salivary gland43 ± 54 of 4 3.34Up
Larval midgut70 ± 284 of 4 5.45None
Larval tubule6057 ± 424 of 4471.40Up
Larval hindgut134 ± 434 of 410.48None
Larval fat body47 ± 184 of 4 3.70None
Larval trachea14 ± 53 of 4 1.10None
Larval carcass30 ± 104 of 4 2.41None
S2 cells (growing)8 ± 14 of 4 0.62Down
Whole fly12 ± 13 of 4

Looking for FBgn0001229. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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